CSH_0004_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGAGTTCTT | CAGCGGTGTC | AGCCGTTGGG | AGTTTTATGA | AAAGTCCTCT | TGTATCCTGG | 60 | |||||||||
61 | GCTAAAACAT | TTCAAGATGA | AGAGAAGAAA | AGTTTAGAAT | ACCGAGGCTT | ATGTGATGGT | 120 | |||||||||
121 | GTATTCCTGT | ATAACTTGTG | GTTAGAAATT | GATCCTCACC | CACCTTACCA | TGGAATTAAT | 180 | |||||||||
181 | ACCTCAACTG | AAGATCTCCC | TACTCGTATA | CGTAACCTAG | ATGTTTTGAT | TCATAACATT | 240 | |||||||||
241 | AAAGCCTTCT | ATGAAGAAGT | GCTTGGTCAG | TTACTCCTTA | TTAAAATCCC | TGATATCCTA | 300 | |||||||||
301 | AAGTTAGCCC | GACATCATGA | AGAACATTCC | AGTGTTGGAG | AGATGGAGAC | TTTGTTGCTT | 360 | |||||||||
361 | TTGATTTTAG | GGTGTGCAGT | TCAGTGTGAA | AGAAAAGAAC | ACTTCATTGA | AATAATAAAA | 420 | |||||||||
421 | TCCATGGATT | TGGAAATTCA | ACACAAAATA | GTAGATTACA | TTCAACAGAT | TACTGATAAT | 480 | |||||||||
481 | CCTGGTACTA | TTTGGACAAA | TGAATGGAAT | GAGCTGAGCC | TTGTACCTCC | TGAAGATCAG | 540 | |||||||||
541 | GAGCATATGT | ATAGTCTCCT | AGTTCAACAC | CTTCGTCGTC | TAGTCAAAGA | AAAAGATGAA | 600 | |||||||||
601 | CTGTCTCAGA | AAGTTGTTCA | TACTGCTTTA | CAAAATTTGT | GCCTCACTTC | AGGAAGTAGC | 660 | |||||||||
661 | CCTCTTAGCC | CATCGAGTAC | AAGTAGTATG | GACAAGTCCC | ACCTTATAGT | AGAACTGGCA | 720 | |||||||||
721 | GATGTAAAAG | CAAGATTAAG | GAAACTTCAG | CAAGAAGTAG | AAGAAAAGAA | TGAGGGAATA | 780 | |||||||||
781 | ACAGAGTTAA | AGGAGGAGTT | AGAAAAATCA | AAAGAATCTC | AAAGTAAATT | GAGACAAGAA | 840 | |||||||||
841 | AACTTGGAAT | TAATTCAAGA | TGCACGCACA | GCCAAAACAT | ATAGGGATGA | GATTGATATT | 900 | |||||||||
901 | CTCAAAGAAA | GAGTTCGTAA | AGTGGATCGA | TTGGAAAGTG | AAATCCAAAG | ATATAAAGAT | 960 | |||||||||
961 | AAAATGAATG | AGCTTGATTT | CTACAAGTCA | AGAGTAGAAG | AACTCAGGGA | AGATAACAGA | 1020 | |||||||||
1021 | ATCCTCGTTG | AGACCAAATC | CATGCTTGAG | GAACAATTAG | AAGCAAGCCG | GAAGAGGGCA | 1080 | |||||||||
1081 | GAACAAGTAG | TTGAATTAGA | GGCAGAAATT | TTAAAATATT | GTTCACAGAT | TAATGAACTT | 1140 | |||||||||
1141 | CATATAGAAA | GAGATGCAGA | CAGAGAAAAA | ATTCAACAGT | TACTAGAAGA | GAATGCACAA | 1200 | |||||||||
1201 | CTTCATATTG | AACGTAAAGC | CTCTATGGAG | GAATTAGTTC | AACTGCAAAG | TGAACTTTCT | 1260 | |||||||||
1261 | CATGCATTTA | CTCATACCTC | ACCTCTTGAA | AATCATAGTC | TAATGGAACA | ATTAAATACT | 1320 | |||||||||
1321 | GATGCCCAAA | CCAGAGTTTT | GCAGCTGGAA | TTAGAAAACC | AAAGACTTCG | TATGTTAGTT | 1380 | |||||||||
1381 | GAAAGTCTTA | ACCGATCGCC | TTCATTTGAA | GTCACAGATC | CTGAGGGTTT | GAAAGAAATG | 1440 | |||||||||
1441 | GAGGATTACA | TGAATAATTT | GGATCTCACA | GGATTGAAAA | ATGTAGGAAA | TGCTGAAAAT | 1500 | |||||||||
1501 | ATTGGAAATC | TTAAGAAAGA | GCACAAAGCA | CTGAAAGAAA | AGAACAATAA | TCTAGAGAAA | 1560 | |||||||||
1561 | GAGCTTGCAG | AACTAAAACT | AATCATTAAA | AGATTATCAT | CCTTTGAAGT | ACAGTGTACA | 1620 | |||||||||
1621 | GAACTAGAGA | AAGTTAATGC | AGAATTGAGA | CAAAACATTA | AATCTCTACA | GGAGGAAGTT | 1680 | |||||||||
1681 | GCCAAATCTG | AACAGTTAGA | ACATAGTTTG | AGCTCTGCCA | CAACTGAAAA | TCAAAAGCTT | 1740 | |||||||||
1741 | CAGAGGATAA | TTGAAACAAA | TCAACAACGT | ATTAAAGATT | TACAGCAAGA | CCTACAAGCA | 1800 | |||||||||
1801 | ACAGAAAATG | AAAATCAGAA | ACTGAACAAC | AATGTAGAAT | GTCTGAAATT | ATCGGTTCGT | 1860 | |||||||||
1861 | AAATATCATG | ATTTGGAAAG | AGAAACAACC | AATCTAGAGA | CTGTCAACCA | TAGATTAGAA | 1920 | |||||||||
1921 | CAGGAAATGA | AAGGACTGGA | AAAGGAGAAT | AACAGATTAA | AGACTGCCAT | TGAGTCCAAG | 1980 | |||||||||
1981 | GATTTGACAA | TAGAAGAGTA | TGCTTCTCGT | GTTGCATGCC | TGGACAGAGA | AAACAAACAG | 2040 | |||||||||
2041 | TTAGTGAAAG | AGGTTGAAAA | TTTAAATCAA | GTGGCAGCTA | AAGTTCGAGA | GCTTGAACGA | 2100 | |||||||||
2101 | GAAAACAAAG | ATATGTCCCA | ACAAATTGCT | GTTGATAAAA | AATCTTTGGA | AGCTTTACGC | 2160 | |||||||||
2161 | CAGGACCTGG | TTTCTGAGAA | GATTGCTAAT | CAAAAACTAA | ACAATGAAAT | TCAGAAAGTG | 2220 | |||||||||
2221 | AAAACTCAGA | TTGAAAGTAA | TGAAAATCCC | CCAGAAATAT | TTTCTTGTGA | TCCTGATATT | 2280 | |||||||||
2281 | CAACGAAATG | AATTAAAGGC | AGCTGACAGA | TTTTTGTGTG | AGAAAGAACA | GAAAAGCAGT | 2340 | |||||||||
2341 | GAAATATCCC | TATTTCCTAA | TTATAACATA | GAAAATTGTT | CTGAATTTCA | AAAAGATTCC | 2400 | |||||||||
2401 | TCTAACAAAG | AATTAGGTCT | AATATTGAAG | GAGTCATCTG | AAACTTCTCC | TACTATAAGT | 2460 | |||||||||
2461 | AAAAAGAAGT | TGGATAATTC | TCCTGAAATC | AAAGACAAGT | GTATCAGTAG | AAAATTCTCT | 2520 | |||||||||
2521 | AATGAAAAAG | ATGAACTTGG | ACTTCTTTCT | CTCCGAGAAG | AACTGCAAGA | GTTAAAAGCT | 2580 | |||||||||
2581 | GACGTAATCG | AGTTAGAAAA | GAGGAAGCTA | TCTGTAGAAG | AAGAAAACTG | CAACTTAAAC | 2640 | |||||||||
2641 | AATCAAGTCT | CAAATTTAAA | GGACCAAAAC | AATAACTTGA | AAAGTCAGTT | AGAATCTGTT | 2700 | |||||||||
2701 | GAGCAGCACC | TTTCATCTGT | ATTATCTCAA | AATAGTACAT | TGCAATCTAC | TCTGGCCAAA | 2760 | |||||||||
2761 | CTTGAAGTGG | AACTTACTCT | GGTATCCTCC | CAGAATAAAA | CTCTTGCTTC | ACAAAACTCT | 2820 | |||||||||
2821 | CTCTTCCAGA | CTCAAGTGTC | TAATTTAGAA | GAACAGATTA | AAAAAGCAAA | TGAGCAGTAT | 2880 | |||||||||
2881 | GCAGAATTAG | ATAGCAGAAA | TCGATGGTTA | GCTACAGATC | ATGAATCCCT | TCAGCGTCTT | 2940 | |||||||||
2941 | CATGAGCAAC | TGACAAATGA | CTATGACTCT | CTGGAGAAAT | TACAGGCAGC | ATTGTTTTCA | 3000 | |||||||||
3001 | CAAGAAGAGG | TAATGAGGTT | AAGAGAAGTT | CTTGAAGAAG | ATGATGCAAG | AATTGAAAGG | 3060 | |||||||||
3061 | GGATTGCTTA | ATTCTTTGAG | ATCTGAACAC | ATGCAGCTTA | AGGAGCAGTT | GAAATCTTTG | 3120 | |||||||||
3121 | AGGGAAACTC | ATGAAGGAGT | GTCTAAAGAA | CTTAAATCTC | TGCAAGCAAT | CCACAAATCC | 3180 | |||||||||
3181 | TTAAAGACTG | AAAATAATGA | GTTGAAATTG | AAGCATACTG | CTATGCAGGG | AGAGCTACTT | 3240 | |||||||||
3241 | GAATGTCAAA | ATGAAACATC | TTCTCTTGAT | GTTGAAGTAT | CTAAGTTAAC | TAGTTGCTGT | 3300 | |||||||||
3301 | GAGCTTCTGT | CCCAGAAAAA | TTCATTGTTG | GAAGAAGAGC | AACAATCTTT | AATGTCTCAT | 3360 | |||||||||
3361 | GTTTCTGTTC | TACTTAGTCA | ATATCATGAA | CTTTTATACC | AGGTAGTTTC | AGAAAATGGA | 3420 | |||||||||
3421 | CAGTTTAGGA | AAGAAGAGAA | TAGTTTCAGA | GAAAAGTTGC | GGGAGCTGTG | TCAGCAAAAG | 3480 | |||||||||
3481 | GAAAAATTGG | AGCAGAAGAT | AATGGATCAT | TGTAACAAGC | TACAGAAATC | ACCCAAAAGA | 3540 | |||||||||
3541 | AGAACAACAT | CTGGTGGATC | ACTAAGGATG | CGAAGAACAC | GTTCAGCCTT | TTTAAGGAAT | 3600 | |||||||||
3601 | TCAAAACATG | ATCCTCTGAG | TTCTCAGTCT | GATAACTCAA | CAGATTCAAG | TCTGTATTGC | 3660 | |||||||||
3661 | AGTCTTCGCC | GAACAAATAA | ATCTTTAGCT | TGGCCTCACA | AGAGAACAAG | TTTATTGAAT | 3720 | |||||||||
3721 | CCAGAAGATT | CTTGTCAAGA | AGATCATATT | CCTGTACGAG | ATGTTGGTCT | GTCTGTACAG | 3780 | |||||||||
3781 | AAAGAGGGAA | ATGGGGAACA | AAACATTCTA | CTATCTTCAA | ACAAAGGAGA | TCCTATCTCA | 3840 | |||||||||
3841 | TCAGAGCTTA | TGAACGAGAC | TGGACCACAA | CATACTACTC | TAGAAAACAA | CATGACATTA | 3900 | |||||||||
3901 | AACTTCATCA | CCAACCTGAC | CAACACTGAT | GTCTTGGGTC | AACAATTCTC | TCGTAGTGCT | 3960 | |||||||||
3961 | TCCTCTCAGC | AGATATCTCC | ATACATTGGT | CGTCATCGTA | CAGTAGACAA | CACATTTCAG | 4020 | |||||||||
4021 | CCACTGCCAT | TCCTTCCATC | ATCAAATGAT | GTCACTCGCT | GCTCGCAAGT | TACTAACAAA | 4080 | |||||||||
4081 | CCTACTCGCC | CACTTTCAGC | ATTTTGTTCC | GACACTAATA | GCAATGTTGA | TAATACTGAG | 4140 | |||||||||
4141 | GCTTCCAAGA | TATCTAGGAC | TAAAACTGAT | AAAACCAATG | ACCAAAATAG | TATGCGCAAC | 4200 | |||||||||
4201 | ATGACTAAAG | AGAAATCGCT | CGAAAATTCT | GTGTGGTATG | AATATGGTTG | TGTA | 4254 |
Single Nucleotide Polymorphisms | ||||
450 | A= 0.74 | T= 0.26 | ||
1677 | A= 0.72 | G= 0.28 | ||
3399 | C= 0.64 | T= 0.36 | ||
3435 | A= 0.82 | G= 0.18 | ||
3981 | A= 0.69 | G= 0.31 |