| CSH_0018_Complete Single nucleotide polymorphisms | ||||||||||||||||
| 1 | ATGAAGACTC | TAGATATGGG | TCCAGATGAC | ACTATCAGCG | AAGCCGAGCA | TCTGGTTACT | 60 | |||||||||
| 61 | CTCAAAGTCT | ACATTCCTGA | TCTGCTCATT | CAAAAAAACT | TTCAGTTTCA | AAAAGATGAA | 120 | |||||||||
| 121 | TACATTTGGG | ATATTAAACA | GCACGTAATT | GATTCATTAC | CCAAGGAAAT | CAAAGAAAGT | 180 | |||||||||
| 181 | TTTAATTACG | GCCTTTTCTG | TCCTCCAATC | AATGGAAAAG | CTGGAAAATT | TCTGGATGAA | 240 | |||||||||
| 241 | CAAAGACATT | TATCAGATTA | TCCTTTTCAT | TCTTCTGTGG | GTTATGTAGA | ATTAAGGTAC | 300 | |||||||||
| 301 | AAAAGAAGGG | TGTATAAAAT | GATGAATGTA | GAAGAGAAAC | AGATCAAGCA | GTTGCACACA | 360 | |||||||||
| 361 | AGGGCAAATT | TGCGGAGAAT | GTTAGACCAT | GTTACTAGTG | GTCAAGTTGA | AAAGATCACA | 420 | |||||||||
| 421 | AAAATGTGTG | CTAGAGGGAT | GGATCCAAAT | TTTCACTGCC | CAGAATCTGG | AGAAACTCCG | 480 | |||||||||
| 481 | CTTACGTTTG | CAACTACTTT | GAAACAGCCT | GCAAAAGTCA | TTATGGCATT | AATAAACGGT | 540 | |||||||||
| 541 | GGGGCCTTAC | TAGATTTTAG | AACCAAAGAT | GGACTGACTG | CTCTGCACAA | AGCTGTAGAG | 600 | |||||||||
| 601 | AGAAATAACC | TCGAAGCTTT | AAAAACATTA | CTTGATCTTG | GGGCGTCACC | AAATTATAAA | 660 | |||||||||
| 661 | GACAGTAAAG | GTTTAACTCC | TTTGTACTAT | ACTCTTCTCC | ATGCTAGCGA | TCACCAATTG | 720 | |||||||||
| 721 | ACAGAACTCT | TGTTACATGA | TCATGCGTTT | GTTGGAACAT | GTGATCCTCA | GGGTTGGCAA | 780 | |||||||||
| 781 | GAAGTTCATC | AGGCTTGCAA | ACATGGCTTG | GTCCAGCATC | TTGAACACTT | GCTTTTTTAC | 840 | |||||||||
| 841 | GGGGCAGACA | TGAATGCCCG | TAACGCTAGT | GGTAATACAC | CATTACATGT | ATGTGCTGTA | 900 | |||||||||
| 901 | AACGATCAAG | AAAGTTGTGC | AAGAGTTCTT | CTCTTTCGGG | GAGCAGACAA | GAATGCTTTA | 960 | |||||||||
| 961 | AATTTTGCTA | ATCAAAATCC | TTATCAAGTT | GCTGTTATTG | CTGGTAACCT | GAACCTTGGT | 1020 | |||||||||
| 1021 | GAACTTATTA | GGAATCACAA | TGCTGAAGAT | GTAGTGCCAT | ATCGTGAAAT | GCCTAGATAT | 1080 | |||||||||
| 1081 | AATCCTAGAA | GACGAGCAAG | CATTGCACCT | GTTTCAACGC | TGAGTCGTAC | TCATAGTGAT | 1140 | |||||||||
| 1141 | CCACGCCTTG | ATTTAAATCT | GGGAATGAAA | CCTCCATCGC | CATGTCCATC | AAACTGTTCT | 1200 | |||||||||
| 1201 | TTGCCACCTT | TTTCATCTAT | CTCTTGCATT | TCTGATACCT | CTACTACATC | TTCATCGACT | 1260 | |||||||||
| 1261 | TGCACACAAC | CAAGTGGTGA | AGATAGTGAG | GATACAGCTT | CAGGAAGTGT | TATAACAGAA | 1320 | |||||||||
| 1321 | AAAAGTGTCA | CTAGTGATTC | CTCTGGTGTT | TGTACAAGTA | ACAGTGCAGC | AAGTTATGAG | 1380 | |||||||||
| 1381 | TCTGGTCAAG | AACAGCATGT | TACCAGTGAC | AATTTTATGC | CTGGAAACAC | ATGTATATGT | 1440 | |||||||||
| 1441 | ATAGCAGATT | ATAATTCAAT | GATTGCTGGG | CATTTACAGT | TATTAAATGG | TGACACTGTT | 1500 | |||||||||
| 1501 | GAAATCCTTG | GTAATACTGA | AGATGGATTG | CTCTTAGGCA | GAACAGTGTG | TGGTCAAGTT | 1560 | |||||||||
| 1561 | GGGCTTTTCC | CTGCTTCTTG | TGTACAAGAA | GTTACTCCTA | GAAGTTTTGA | TATACCTAGA | 1620 | |||||||||
| 1621 | GTTGAAGGGA | GGAGAGAAAG | ATGTGCCAAA | AGAGTTAGTA | ATATTCCTAG | AAGATGGAAA | 1680 | |||||||||
| 1681 | GCGTTTGGTG | AGCCTAGGAC | AGTTATTTTG | CATAAAGGTA | AAAAGGGGTT | TGGATTTGTA | 1740 | |||||||||
| 1741 | TTACGTGGTG | CCAAAGCTTC | AAGTCCATTA | ATGGAGAGAG | AAACAAACGA | TTCCTGGCCA | 1800 | |||||||||
| 1801 | AGTCAGTATT | TAGAAGATGT | GGGTAAAGGA | GGTGTTGCTG | ATTTAGCTGG | CTTAAAAAAG | 1860 | |||||||||
| 1861 | GGAGATTATT | TATTAGAAAT | CAATGGGCAA | GATGTTTCTC | AAGCTTCTCA | TGAACATGTG | 1920 | |||||||||
| 1921 | GTTTCTATTA | TACAACAATC | TGGAGACTTA | GTTGCTATGA | CAGTTATTAC | TTTACAAAAT | 1980 | |||||||||
| 1981 | CCTCCATTTG | GAACTCCTAT | TGAGAACACT | CCTTTACCTT | ATCGTCAGTG | TGCAACATTA | 2040 | |||||||||
| 2041 | CCTCGCAAGC | TTGCCAGTAA | AAAGGCCCCA | GCTCCACCTA | AAAGAGATCC | AAAAACAACT | 2100 | |||||||||
| 2101 | TTGTCAGTGG | GACGAGTTCG | AGCTCGATCT | ATGGTAGCTG | GTTTAGCTGA | AATAGAGTCA | 2160 | |||||||||
| 2161 | CTTGACCGGA | ATCTGAATGA | ATACGATTCG | GAGGGCCGAT | CAACTAAAAG | TAGCTCTGTT | 2220 | |||||||||
| 2221 | GAAAGTATCC | CTAATAAAAC | TGGAATGAAA | ATGACCGATG | GTCATTTAGT | AAAGACTGCT | 2280 | |||||||||
| 2281 | TCCATAAAAG | CTCGACCTAG | CTCACAGAGA | GTTTCTGCTG | CAGAATTAGA | ACAATTTTTC | 2340 | |||||||||
| 2341 | CAAAGACAAG | GATCAGAAAA | TCAGCAGCTT | CGCAGCTACA | CCCTGAGCAA | CAGGACAAGA | 2400 | |||||||||
| 2401 | GCAACAAACC | GTCCACCAAA | AGTGTATGGA | AGTGTCGCTG | AAATGAAGCG | ATCGAAAGCA | 2460 | |||||||||
| 2461 | TCAAGATCAA | AGATAGCTGA | AGTGGCAATG | AAAGTGCATA | AAGAGTTTTT | CAGTACACCT | 2520 | |||||||||
| 2521 | GATTTAAAAG | CTGAAGTTGT | TAGCAATAAT | CCAAATAATC | AAATACTTAG | AAAACGAAGT | 2580 | |||||||||
| 2581 | ATAAGCCAAG | AAGATGTACG | GAATATCCAA | GGAAGTAGGC | ATTCGTGGGC | TTGCACACCA | 2640 | |||||||||
| 2641 | AATGGTTATA | ATAGTTATTT | AGGTCTGTGT | GATAATGATG | ATTACAGTAT | GAATTATCAT | 2700 | |||||||||
| 2701 | GATGCTTGGA | AGTCAATTGA | AGATGTTTAT | GATAGCACTG | TGCCTGTCGA | TGTAAGGGAT | 2760 | |||||||||
| 2761 | GTAAATGCTG | ATATTTATGC | ACAAACTTTA | CCCTTAACAA | AAAAAGAAAA | AATCTCCAGA | 2820 | |||||||||
| 2821 | GCAAGTTGTC | CTCCACCTTC | TCATCCTCCC | CCACCTCCAC | CAGTTGGACA | AGTTGTAAAA | 2880 | |||||||||
| 2881 | GTAGATGTTT | CTAAAGCCTT | GGGTGAGTAT | GCAAATGTAA | ATATTATGGA | TGAGGAGAGA | 2940 | |||||||||
| 2941 | TCCTCATCAC | ATGTAATGTC | AAGTTTCCGT | CCAGGAGACA | GTGCCAAACT | TTATGCATCA | 3000 | |||||||||
| 3001 | CCTGAGGTTG | TTATGAGTGT | TGGATATAAA | TCTGAAAACA | CAGTGAGTTC | AAAAGACAGT | 3060 | |||||||||
| 3061 | GTACAGCCCA | GACGAGCTGG | AGGAGGATCT | AGTCTTAGAT | CTCAATCTCT | TCCTCCAAAG | 3120 | |||||||||
| 3121 | ATTCCTGGAA | ATAAATCAGA | TAGAGGAAGT | ACAACATCTT | CAGAAGCTGA | AAATAGTGGG | 3180 | |||||||||
| 3181 | GATTCTGGTG | GCTTGTATTC | AACTTTTAAG | AAATCAAATA | GACAGAGGGA | TTCTTTGTCT | 3240 | |||||||||
| 3241 | ACTGACAGTG | GTCATGTTTC | TGACCGAGGA | ACACTTCGCT | CATTAAAAGG | TAAATCTTCA | 3300 | |||||||||
| 3301 | GTCACTAGTG | CCTATGCTTC | AAAATTTGAT | TTTGAAGATT | CTGATGTGGG | AAGTCCTCAA | 3360 | |||||||||
| 3361 | AATTATCCTA | CAGTTAGAAC | ACCCAGCCAT | GAGCCTTTTA | TTCCTGAACC | TGACTACGAA | 3420 | |||||||||
| 3421 | AGTAGCGAGG | ATGATTTTAT | ACCTACATCT | GTAGACAAGG | CTGGTAGTCT | CTCAACGTTT | 3480 | |||||||||
| 3481 | GGGAAAGGTG | AGCAGACCAA | CCAAGAAGAA | AAAACACCTA | CTCAGAGTAA | AGATGAAACA | 3540 | |||||||||
| 3541 | CAGTCTGAAA | CTAACCAACC | ATTGAGTCCG | CACACTGAAG | CTAAACGAGC | TATACAAGAA | 3600 | |||||||||
| 3601 | GCCAGAGAAA | GATTGAGATT | CTCTCAAAAG | CCTATTGATA | AAAATGCTAC | TGTAGTTTTC | 3660 | |||||||||
| 3661 | ATTAGTGGTA | AAATCACAGA | GCACAAGGTA | GAAAAGAGTG | AAATTCAGCT | TCACAGGACA | 3720 | |||||||||
| 3721 | GAAGAAGGTA | GACTTACTGG | CACTGTCGTC | ATATCAACTA | CAAATGAACC | TCAAGAACCT | 3780 | |||||||||
| 3781 | CTGTATTTAT | CTTCATCCAT | CTTAAAATCA | TATGAAAACG | ATAAAAATGT | TGTTCCTCGA | 3840 | |||||||||
| 3841 | TATCCTAGCA | GAGATGCACC | AGCTTCAGAA | TATGCAAAAT | ATCGGCAGCA | GATATTAAGT | 3900 | |||||||||
| 3901 | GGGATGAATC | AACCTGTATG | TTCTGAACAA | GATGCTTCAC | CTGTAGCTGA | ACCAAATGTA | 3960 | |||||||||
| 3961 | GCTGAAGATA | CTAAACTGAA | TGAAGTTATA | GATATTAAAA | AAGAAAGTGA | AGATAGCAGA | 4020 | |||||||||
| 4021 | AAAGAGGCAA | GGCCCAAAAT | TATAGAGGAA | CTGAAGATCA | CACTAACTGG | TGCCCAAAAA | 4080 | |||||||||
| 4081 | TGTCCCATGA | CAAACAAAGA | TATTTTACCT | ATAAAAAAGA | GTATTGAAAA | ATCGAATATT | 4140 | |||||||||
| 4141 | AATTCTAAGG | AATCTTGTAA | AAGTGATGCT | ATGGATAAAA | ACGTTAGTGC | TGGACCTGAT | 4200 | |||||||||
| 4201 | ATAGCTTTAC | AAAGTGATAA | AATCCCAGTA | TTGTCAAGCA | CAGTAGAAGG | TGAAAGTAAA | 4260 | |||||||||
| 4261 | TCTGATACAG | TAGTCCAGTT | ATCAGCGGAA | ACTAACCAAC | AGAGTCAAGA | TAACAACCAA | 4320 | |||||||||
| 4321 | AGGAAAAGTC | ATAAAGATCC | TGAGAGAAAG | ATTGATAAAA | CCAATGACAC | AAAACCAAAT | 4380 | |||||||||
| 4381 | ATTTGCTCAC | AAATAGAATC | AAGTAAAAAA | GCTCTAAAAG | ATGCTAAAAC | TGTAGGTTCT | 4440 | |||||||||
| 4441 | AGTGATGTGC | AACGTGTTCA | AGCTGAAACA | GACAGTGATG | CAAGAAGTTC | TTTGGACAAA | 4500 | |||||||||
| 4501 | AAAGCACAAT | TCAATGAACC | TACTATCAGT | GTGATCAAAA | GTGCTCAAAC | AAAAGATAAG | 4560 | |||||||||
| 4561 | AAAATCCGGT | CGGACAATGC | CTATAACACA | AATAAAAAAT | TTTCTGATGC | AATAAAACAA | 4620 | |||||||||
| 4621 | CAGAGCTCAA | CAGAAAGCAG | TTTAGATGAG | AGCTTGGAAG | TTTTAAGGTT | ACAAGTAAAT | 4680 | |||||||||
| 4681 | TCACTTGGCT | TAGCAGCTGT | AAATGAAGTT | GATGTATTTA | CAGAATTAGT | TCCTCCACCT | 4740 | |||||||||
| 4741 | CCAGAATTTG | CTGCTTCCTC | AGAAAATGGA | AGCAGTAAAA | GAGAGATGTC | TTACTCTACA | 4800 | |||||||||
| 4801 | TCAGAAATTG | CTATAGCACC | TCCTCCTGAG | TTTTCTGATA | ATACTCCGCA | GATAAGAAGT | 4860 | |||||||||
| 4861 | AGGTCATCTT | CACAGAGAAT | GTCATCACAC | AGTCATCAGA | GAAAGAACTA | CCCTCTTAGT | 4920 | |||||||||
| 4921 | TGTCATCTTG | ATGCTACAAA | TTCTGTTGAT | TTAGCTTTTT | TAGCATCATT | TAGTAGCAAA | 4980 | |||||||||
| 4981 | TCTTCTAATA | TCATGCAAAT | GATGAGGGGA | GATAAAAAAT | GCAGTCTAGG | GAGTAGTGGT | 5040 | |||||||||
| 5041 | GGTAGTATTA | ATCTACATTT | ACCATGCACA | AGTGGCCTCA | GGCATATTCC | TTCAAATATT | 5100 | |||||||||
| 5101 | TCTTCTGAGC | ACACTCTCTT | ACGAGACAGT | TCCACAAATG | AACTATCCCG | TCTGAAATCG | 5160 | |||||||||
| 5161 | GTACAAAAAG | AATTTCGTTT | CAAGCTACTT | CAAGAATGGA | CAGCAAATGA | CATTGCTGAC | 5220 | |||||||||
| 5221 | TGGTTAGATA | GCTTATTTCT | ACCTGAATAT | AAGCAACGAT | TTTCAGAAGC | TGGTATTACA | 5280 | |||||||||
| 5281 | GGTGCGAAAT | TAGCCAATAT | GGACAGTAAT | GATTTAATGG | GATTAGGTGT | GAAACAAATG | 5340 | |||||||||
| 5341 | GGACATCGGT | TAAATATGGA | GAGGTCACTC | AAGAGGTACT | TGAAA | 5385 | ||||||||||
| Single Nucleotide Polymorphisms | ||||
| 2601 | G= 0.74 | C= 0.26 | ||
| 4992 | C= 0.74 | T= 0.26 | ||