CSH_0033_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGGAAGAAG | AAAATGATTT | TCTGAAACTT | TCTGTTGAAG | ATAGATGTCA | ACATAAACTG | 60 | |||||||||
61 | TGGAAAGCAA | GATTGAGTGG | TTATGAAGAT | GCTGCCAAGT | TATTTCTTCA | GCAGGATGAT | 120 | |||||||||
121 | GAGAAAAGCC | CAGAATTTAT | GAAATATTTA | GGACTGTTAA | AAAAATTTGT | AATTGATAGC | 180 | |||||||||
181 | AATGCTGTTG | CCCAAGAAAA | AGGTTTATCA | GCTGTCTTAG | CTTTTGTGGA | AAATGCAGCA | 240 | |||||||||
241 | TGTGCTCCAA | GAACTGTTAA | TGATGTTATG | AGTGGACTTG | TAAGTAAATG | CTTTTCTTCA | 300 | |||||||||
301 | CCTCGAGCAA | AAACACGAGA | GCTGGCTTTA | GAAATAGCTC | TAATGTATAT | TGAGATTGAG | 360 | |||||||||
361 | AAACAAGATG | TAGTTTTAGA | AGAATTGATC | AAAGGTCTTG | AGAGCAAATC | ACCTAAGGTT | 420 | |||||||||
421 | GTAACTGCAT | GTATCATTGC | TTTACGTGAA | TCACTAAACT | TATTTGGTTC | CAAAGTCATA | 480 | |||||||||
481 | GCCATTAAAC | CCCTTGTGAA | AGTTTTACCT | AAAATGTTAG | AGGATAGGGA | TAAAAGTGTT | 540 | |||||||||
541 | AGAGAAGAAT | CAAAAATGTT | ATGTGTAGAA | ATATATCGTT | GGGTAGGAGA | AGCTATCAAG | 600 | |||||||||
601 | CCTCAGCTGC | AAACTTTAAA | ACCTGTAACT | CTGACAGAAT | TAGAAGGAGA | GTTCCAGAAA | 660 | |||||||||
661 | ACTGTTGGAG | AAAGAGTTAC | AGCTACTCGG | TATTTAAAAT | CTCAGCAAGA | AAAGATTGCT | 720 | |||||||||
721 | AAAGCTAAAG | AAGAAGGTGG | TGATACAGTT | GAAGCAGAGG | ATGATGCTGT | AGTTACCGGA | 780 | |||||||||
781 | CCTCCACAAG | TTGACCCTTA | TGATTTAATG | ACTGCTGTAG | ATGTACTTTC | AAAATTGCCA | 840 | |||||||||
841 | AAAAACTTCT | ATGAGCAGTG | TGAAGCCAAA | AAGTGGCAAG | AACGTAAAGA | AGTATTAGAA | 900 | |||||||||
901 | ATTTTGCTGC | AGATGACAAC | CAACGTGAAA | TTAGAAGCAG | GTGATTATGG | TGATCTTGTT | 960 | |||||||||
961 | AGAGTATTAA | AAAAATTTAT | TGCCAAAGAT | TCTAATGTTC | TGGTTGTGGC | TCTAGCAACT | 1020 | |||||||||
1021 | AAATGTTTAA | CTAATCTTAT | TGTAGGTTTG | CGTAAAAAAT | TTCAGCCATA | TGTCTCTGCT | 1080 | |||||||||
1081 | TGCATTCCAG | CTATATTTGA | AAAATTTAAA | GAAAAGAAAC | AAAATGTTGT | AACTGCTCTT | 1140 | |||||||||
1141 | CGAGAAGCTA | TTGATGCGCT | GTATAGTATT | AGCTCTTTTG | AGAATATGCT | TGAAGATATT | 1200 | |||||||||
1201 | CAAACAGCAT | TAGATAATAA | GAACCCACAA | GTGAAGGCAG | AAACCTGTGC | TTTTTTAACA | 1260 | |||||||||
1261 | CGTTGCTTTT | GCTCATGCTC | ATCATCACAA | TTAAATAAAA | AATTACTCAA | GGCCTTTACA | 1320 | |||||||||
1321 | ATTTCTTTAT | TGAAGACTTT | AAATGATACA | GATTCTGTTG | TCAGAGAAAA | TTCAGCAGAA | 1380 | |||||||||
1381 | GCATTAGGTA | CTGCATTTAA | AGTTGTTGGT | GAAAGAATAA | TGTCACCATT | TCTACAAGAG | 1440 | |||||||||
1441 | GTAGATGCAA | TTAAAATGGT | AAAAATAAAG | GATTTTTGTG | ATAAAGCTGT | TGTAACTGCA | 1500 | |||||||||
1501 | AAGCCACAAC | AAGCTCAAGC | TGCTGAGAAA | AAGCCAACTT | CTGCTCCAGC | AAAATCTATT | 1560 | |||||||||
1561 | GTAACAAAAC | CAGAGGAAAA | TGTGCCAAAA | TCAGTAATGG | GTGGAGGTAA | AAAACAAGCT | 1620 | |||||||||
1621 | TCAGCAGGTA | CAGTCAAACC | TAAATCAGCT | CCTGCTCAGT | CAAAAATAGT | GAAATCTGCT | 1680 | |||||||||
1681 | GCAGTTAAGA | AAGGTGGGGG | TGAGCCTGCT | GAACCTGAAT | TCAAAGAACA | AGAACTTACG | 1740 | |||||||||
1741 | GATGAAGATG | TTATAACACA | AGCATCGGAA | ATTTTTACAG | ATGATGTAGT | TACTGGCTTG | 1800 | |||||||||
1801 | TGTAGTTCTA | ATTGGAAAGA | TCGATTGGCA | GCTGTTGAAA | AGTTTTTTGA | AGTTGTCCAG | 1860 | |||||||||
1861 | CAAATGGAGA | AAGAAAATAT | ACCAGCTCAA | GCACTAATAA | AATTATTGGC | GAAAAAACCT | 1920 | |||||||||
1921 | GGTTTTAAAG | AAAATAATTT | TCAAATATTA | AAATCGAGAT | TTGAAATTCT | TTCTTATATT | 1980 | |||||||||
1981 | GCTGACAATG | GTCAAATATC | TCATATAAGT | GTTGCAAGTT | GCTTGTCAGA | TGTAGTTGAT | 2040 | |||||||||
2041 | AAAATTGGTG | ATGCAAAGAA | TGGTGCATTT | GCTGGTTCTG | CACTTAGTTC | TTTAGCTGAA | 2100 | |||||||||
2101 | GCTACAAGTT | TAGAATATGT | TAGTCTTGAA | GTTTTGAATC | TGGCATTTAA | TCAGAGAAAT | 2160 | |||||||||
2161 | CCTAGAAATC | AATCAGAAGC | GATATTATGG | GTGTCAAATG | CAATAAAACA | CTTTGGCCTA | 2220 | |||||||||
2221 | AAAGTTAATG | TCAAAGATGT | GATAGACTAT | GCTAAGAAAG | CATTTTCATC | AACGAATCCA | 2280 | |||||||||
2281 | GCTGTGAGGA | ATTCTGCTTT | ATCACTTGTG | GGGACAATGT | ATATGTATGT | AGGAAGAAAT | 2340 | |||||||||
2341 | TTGCGTTCAT | TTTTTGAAGA | TGAGAAACCA | GCATTATTGC | AACAAATTGA | TTCTGAATTT | 2400 | |||||||||
2401 | GAAAAAATGA | AAGATGTTAA | ACCTCCTTTA | CCAGAAAGAG | GAAAAGGAAG | CAAACAAGCT | 2460 | |||||||||
2461 | GGTTGTTCTG | GAGATACGAT | TGAAAGTTCC | AAAGGAGGTG | CACAACAAGT | AAATCTTGCA | 2520 | |||||||||
2521 | GACTTAATGC | CCAGAGTTGA | TATTAGCAAC | CAAATAACTC | AGCAATTACT | GTCAGATCTA | 2580 | |||||||||
2581 | TCTGATAAAG | ACTGGCACTT | ACGCAGTGAT | GCATTGCAGA | AAATATCTGG | AATAATTAGT | 2640 | |||||||||
2641 | GATGCAAAAT | TCATTACTCC | TAACTTAGGT | GATTTGCCTA | GTGCTTTAAA | ACCTAGACTG | 2700 | |||||||||
2701 | GCTGATACTA | ATAAAAAGTT | GGCTGTACAA | GCATTAGGTA | TTTGCCAGAT | GTTAGGAACA | 2760 | |||||||||
2761 | TCATTAGGCT | CCCACTGTTC | CAAACAAATA | AGAAATTTTG | CTCCTGGAAT | ACTTACTTGT | 2820 | |||||||||
2821 | TTAGGTGATA | ATAAGGCTCA | TGTAAGAGCT | GCAGCATTAC | AGTGCTTAAA | TTCTTGGATT | 2880 | |||||||||
2881 | GATAACTGCT | CTTTAACTTG | TTTATTTGAA | GGAGAAATGA | TTTTTGATGT | GCTTAAATCA | 2940 | |||||||||
2941 | GATAATCCAT | TTTTAAGGAT | TGAACTATTT | TCATGGTTAA | CTGAAAAACT | GCCTACTGTA | 3000 | |||||||||
3001 | ACATCTTTAC | CTGCATCTGA | ATTAAATCTT | TGTATTCCAA | TTCTGTTAGG | ATGCTTAGAA | 3060 | |||||||||
3061 | GATCGTAATG | CTGATGTGAG | AAAAAAAGCA | TCAGAATGTC | TTCTTCCTTT | TATGATTCAT | 3120 | |||||||||
3121 | GTAGGTTATG | AATCTATGGC | TAGAGCTGCA | TCCAAATTGA | AACCAGCATC | AAAAAACACT | 3180 | |||||||||
3181 | GTTATGGCAC | AGCTGGAGAA | AGTTCGCCCG | AATCTACCTG | AAAAGCCTAG | CAATAAACCA | 3240 | |||||||||
3241 | AAACCAACTA | GAAATACCAT | CCCTGCACCA | AGTGAAAGGT | CCTCTCCTCC | ACAGGTTACA | 3300 | |||||||||
3301 | GGAGCTGAAG | ATGGTGTGAA | AGGAAAATTA | AATCGCAGTT | CATCTAAATC | TAAACTTGCA | 3360 | |||||||||
3361 | TTAAAAGCTC | CTTCAGCCTC | TTCCAAAGGG | AAGAAAGAGG | AAGAAATAGA | TACATCACCC | 3420 | |||||||||
3421 | TCCCTTGTCA | TTAATAATAT | GAAAGATCAG | AGGCTACTAG | ATGAAAAAGC | TCTGAAAGTT | 3480 | |||||||||
3481 | TTGAGATGGA | ACTTTACAAA | CCCCAGGGAA | GAATTTTATG | TTCAGTTAAA | AGATCAAATG | 3540 | |||||||||
3541 | ACCTCAGGAA | ACTGGAGTAA | AACATTAATT | TCTCATTGCT | TTCATAATGA | CTTTAAGTTC | 3600 | |||||||||
3601 | CACATTAAAG | CAATTGATTT | ACTCATAGAA | TCATTGGAAG | GTGCTGTGGA | ACCATCAGCT | 3660 | |||||||||
3661 | GCAAATCTAG | ATTTAATACT | GAAATGGTTT | GCTTTACGAT | TCTTTGACAC | TAATCCAAGT | 3720 | |||||||||
3721 | GTTTTGATTA | AAAGCTTGGA | GTATTTACAG | GCTTTATTTC | AATCACTTTC | ATGCATCAAT | 3780 | |||||||||
3781 | TATCGTTTAT | TAGAGCCTGA | AGCTGCATCT | TTTGTTCCTT | ACTTAATTCT | GAAAATGGGT | 3840 | |||||||||
3841 | GATTCTAAAG | ATCCAGTTCG | TAAAGGTGTG | AGGGAAATTC | TTAAAACTAT | TGGTAAAATT | 3900 | |||||||||
3901 | TATCCAAGTA | GCAAAATGTT | TTCATATATC | ATGCAGGGTT | TAAGTTCCAA | GAATGCTAGA | 3960 | |||||||||
3961 | CAACGAGCTG | AATGCCTTGA | AGAACTTGGT | TCTATGATTG | AGATATTTGG | TCTGAATGTT | 4020 | |||||||||
4021 | TGCCAACCCT | CTCCAGCTGC | TGCTTTGAAA | GAGATTGCCC | GCCAGATATC | TGACCGTGAT | 4080 | |||||||||
4081 | AATAGTGTCA | GAAACGCATC | ACTTAACTGT | TTCGTGCAAG | CCTATTTTAT | TGAAGGTGAG | 4140 | |||||||||
4141 | AAAGTGTATA | AATATGTTGG | GCAACTATCT | GATAAAGATA | TGAGTTTACT | TGAAGAAAGA | 4200 | |||||||||
4201 | ATAAAACGGA | GTGCCAAGAC | AAGAATGGTG | AAGCCTTCAG | AAAGTAAACC | AGCTGTTACT | 4260 | |||||||||
4261 | GCAGTATCTA | GCATTCCTAC | AAATTTAAAT | GCAGCTGTTG | CAGTAGAAGA | ACCTCAGAGA | 4320 | |||||||||
4321 | TTATCTCAAG | TAGCTACGTC | ACGAAATCAT | CCTTCTGGTC | CCTTGAGATT | AGAGACTGAT | 4380 | |||||||||
4381 | GACATTGAGC | AGATGTTCAG | ACACAAACAG | TCTGAATTTG | AAGTGCCTGG | ATTGGTTAAA | 4440 | |||||||||
4441 | GTCAATGCAG | ATGATATACT | TAACCTACCT | GACATTCAAC | TGCCACCAAC | TCGACTAAGA | 4500 | |||||||||
4501 | CCTCCAGCAT | CATCATTAAA | ACTTCTGAAT | AATTCAGCTG | AAGCCAATAC | TGCTGTAAAT | 4560 | |||||||||
4561 | CTTGTTATGG | CTCAGTTAGC | TGCCCAAGAA | ATTCCTGTTG | TAGTTGAAGC | ATTTGCTCAA | 4620 | |||||||||
4621 | GTTGAAGAGG | TGCTTAAACA | GAGTGAGCAA | GCAATTGCTG | TGTTAGGGCC | TCGTGTAGAT | 4680 | |||||||||
4681 | CAGTTACTTG | TAATGGGGGC | TATGCAGTAT | CGATATGCAC | ATACTAAACA | TATGGCAGAT | 4740 | |||||||||
4741 | GAAAATATAT | GTAAAGCCGA | TGTAATACGG | TTGTACAGAT | GTGTAACAGT | AGCATTAGTA | 4800 | |||||||||
4801 | ACATTATTTG | ATAATCCTGT | TCTTGCAAAA | AAAGCTAGTA | GAGATGTATT | GAGAGATTTA | 4860 | |||||||||
4861 | ATACCTCATC | TTCTTACTGT | TATGCTAGAT | AATAGGCTGG | ATGACTTGCA | AGAGGGTGCA | 4920 | |||||||||
4921 | CAAGTCGTGA | AAGTTATCAA | TGTTTTAATT | ATGAGAGTCT | TACAAAAATC | AAATCCAACC | 4980 | |||||||||
4981 | CATGTTTTAA | GTGCACTAAT | TAAACTTCTG | CATGATTGTG | TTGGAAGTGT | CAATGTTTCA | 5040 | |||||||||
5041 | GATCGTTTTA | CAGATTTAGT | TATGAAATGT | CTGTGGAAAA | ACATTCGTCT | TATCCGTCAG | 5100 | |||||||||
5101 | GTCATAAATG | AGTTAAATAT | TGATCGAATT | TTACTTGATG | TACATGTATT | TTTGAAAACA | 5160 | |||||||||
5161 | TTTCCTTCAT | CATCATGGAA | AGAAAGGAAA | GATGACACAC | CTATCCGTAC | TATTAAAACT | 5220 | |||||||||
5221 | ATTTTGTATC | ATTTTGTAGA | AATCAAAGAT | GAAGACATAA | TGAAACACTT | GTCCTTAATA | 5280 | |||||||||
5281 | TCAGATAGGC | AAGAATCTGA | CTTAGTAAGT | TATCTTCACA | AGTTATTAGC | TAAAAGAAAA | 5340 | |||||||||
5341 | GGTGACAATC | GAAAATCACT | CAATAAGAAC | ACAGTTCCTG | ATGATAATCG | TCATAAAAGG | 5400 | |||||||||
5401 | AGCAGGTCAT | CTCCTTTGAA | GCTGTCAAAA | TCAACTCATG | AAGCTTTGAC | AGAAATTTTC | 5460 | |||||||||
5461 | AAAAAGATTG | GGTCAAAAGA | ACAAACAAAA | GAAGGACTTT | CAGAATTATA | TGATTTTACT | 5520 | |||||||||
5521 | CAAAAGCATC | CTGAAGCTGA | TATCGAACCA | TATCTCAAAA | ATTCTTCTGA | CTTTTTCCGC | 5580 | |||||||||
5581 | AATTACATTC | GCCAAGGCAT | CAAAGATCTT | GAAAGGAAAA | GGAGCACTGG | CACAGATTCT | 5640 | |||||||||
5641 | CCAGTTCCCA | AGTCCAGAAA | ATCTGAAGAA | TGGAATTCTA | ATTTATCCGG | GAATGATTCA | 5700 | |||||||||
5701 | CTCTTTAAAG | AAAAAACTGG | TTCACTCTCA | TGGCAGGATA | AATTTCCCCC | TCTACCTCCA | 5760 | |||||||||
5761 | CCTACCATAG | ATACTACTCC | TATGGACTTA | GTTGAGTGGC | TTAAAAGTGT | TGTTGCCCGT | 5820 | |||||||||
5821 | TTGGGAATGG | ATACATCAAA | ATATGATGAT | CCAGCCTTCT | TGGAAAAAAT | CATGGGAAGT | 5880 | |||||||||
5881 | GATAGTGAAG | GCAATGTAGA | TGAAGACATT | GCACAAATAT | TTGCAGATAT | TGAGAGATAC | 5940 | |||||||||
5941 | AAAAAAATCA | TCCAAGACTT | AAAAAATGCT | GCA | 5973 |
Single Nucleotide Polymorphisms | ||||
154 | C= 0.82 | A= 0.16 | G= 0.02 | |
404 | G= 0.58 | A= 0.42 | ||
483 | C= 0.63 | T= 0.37 | ||
528 | G= 0.83 | A= 0.17 | ||
607 | C= 0.87 | T= 0.13 | ||
789 | A= 0.58 | G= 0.42 | ||
1857 | C= 0.57 | T= 0.43 | ||
2428 | T= 0.64 | C= 0.36 | ||
2480 | T= 0.51 | C= 0.49 | ||
2949 | A= 0.52 | G= 0.48 | ||
3159 | G= 0.55 | A= 0.45 | ||
3212 | A= 0.67 | G= 0.33 | ||
4248 | A= 0.57 | G= 0.43 | ||
4465 | C= 0.56 | T= 0.44 | ||
4479 | A= 0.60 | G= 0.40 | ||
4791 | A= 0.54 | G= 0.46 | ||
5100 | G= 0.51 | A= 0.49 | ||
5142 | A= 0.58 | G= 0.42 | ||
5409 | A= 0.59 | G= 0.41 | ||
5556 | C= 0.63 | A= 0.37 |