| CSH_0036_Complete Single nucleotide polymorphisms | ||||||||||||||||
| 1 | ATGGTATTAG | AAATACTTCC | TATGGATCTT | TCTTCAACAG | TAGTAATTGG | ATCCGCTCTG | 60 | |||||||||
| 61 | TCTATTATAG | TTGTCATCAT | TAGTTATGTG | GTTTATAAAA | TTGGCATAGG | AGAGAAGTCA | 120 | |||||||||
| 121 | TTTGAGGAAG | TGATTGAAGA | GCAGAAAAGA | CGTAGTATTG | AAGAAGAGCA | GAAGCAAAAG | 180 | |||||||||
| 181 | TCAGAAAAGG | TTAAAAAGGA | GAAAAAATTC | AAGAAGACCT | GGGGAAAAAA | GAGTAAAGAG | 240 | |||||||||
| 241 | AAGGCAGAGA | TAGAAGTGAC | ACCAGAACCT | ATACAAGTGG | TTGAAACTAA | AGATGTTGCA | 300 | |||||||||
| 301 | ACTGATATTG | AAATAATTGA | ACCAAAGGAA | ATAAAGTTAT | CAAAGCAGAA | GAATAAGGCC | 360 | |||||||||
| 361 | AAATCTGCCC | CAAATCAACA | GTTTGTTGAT | ACAACTAACC | AGGAAAAGGT | AAAGAAGGCA | 420 | |||||||||
| 421 | GAAACTTCCC | CTGTTATAGA | TAAGCCTGCC | CAATCAAAAA | AAAAATCAGC | CTCTGACGTT | 480 | |||||||||
| 481 | GAAAAAGTGA | AAACTGAACC | AAAGGTAGTT | GAAACTTCAA | AGCAAGTAGA | GGAGAAGGAA | 540 | |||||||||
| 541 | ATTAGTCGGC | CTCCTGCAGT | GACTTCTGTT | CAGTCTGCAC | CTCAACCTAC | AGTAACTGCA | 600 | |||||||||
| 601 | CATAAGAAGA | AAAAGAAGGA | ACAAGTTGAA | AAAGAAGTAG | CACCATTGAC | TCCAAATAAA | 660 | |||||||||
| 661 | CTTCTGTTAT | TTATAAAAGA | AAGTGAACTA | GAGGCTGAAG | AAATCCAAAA | TTTAATTGAT | 720 | |||||||||
| 721 | GTTTTGCTGA | ATAAGCAGAA | AGACTCATCT | GGCTGGACTA | AAAAAAATGA | TACTCTTGCA | 780 | |||||||||
| 781 | TTGACAAAGA | AAAATCTTCA | TGAGAAAGAG | CAGCTCTTGG | ATCAAGAACA | ACGTCAAAAT | 840 | |||||||||
| 841 | CAAGCTGTAA | CATCAAAATT | GAAGGATCTC | AGAGAAGAAT | ATAATGGTTT | GAAATCTAAA | 900 | |||||||||
| 901 | TTCTCTGCAC | AAGAAAAAGC | ACACCAAGAA | AAATTTGCTC | GTCAGCAACA | GGATATTCAA | 960 | |||||||||
| 961 | ACTTTGACAG | AAAGAGTTAA | ACAACTTCTG | GATCAGTTAT | CTGTAGAAAG | AGAAAAATCA | 1020 | |||||||||
| 1021 | GCTCAGACTG | ATAAGGAAAG | TGATAAGAAA | CTTCATGCTT | CTGTAAAGAG | CTTAGAAGAG | 1080 | |||||||||
| 1081 | GAAAAAGCAA | AACTTATGCA | GAAGATTGCT | AAACTAGAAA | CTGAATCCCG | CTCTGGTATT | 1140 | |||||||||
| 1141 | TCTAAGACTG | AATATGAAAC | TGCAAAGAAA | GCTAGAGAAG | ACTTGCAGAA | GGTTCATACT | 1200 | |||||||||
| 1201 | TTGTTAGTAG | AGCAACATAC | ACAACTTGTA | CTGAAAGAGA | AAAATGAATT | TGCTCAGCTG | 1260 | |||||||||
| 1261 | TCTGATGCCA | AAGCTCAATT | AGAAAAACTC | AATGCTCAGC | ATAAAGCCTT | ATTGGAGGAT | 1320 | |||||||||
| 1321 | TTTAAAACTT | TGAGAGACTC | AAAGGCTGCA | GTGGAGTTGG | CTAAAAGAAC | TGCTGAAGAT | 1380 | |||||||||
| 1381 | AAATTAAAAG | TTGAAGAGAA | ACGATCTGCT | GATCTTGATG | CCCAAGTTAA | GCAACTTTCA | 1440 | |||||||||
| 1441 | GCACAAGCTG | CAGAAATTGC | AAAGCTCCAG | GCTGAACTGA | AGGAATTGAG | AGCAGAAAAT | 1500 | |||||||||
| 1501 | GAAAGACTAA | CTGAACAACT | AGTTACCACC | AAAGAAAGAG | TTGCTGGAGA | TGGGCAAGAA | 1560 | |||||||||
| 1561 | ATTGTACATC | AGAATGGAGA | ACTAAATGGA | AAACCTCAAG | AAATTCCTGA | GAAAATAATA | 1620 | |||||||||
| 1621 | GATGAGAAAG | AAAAATTATT | AAAAGAGAAA | GAATCATTGC | TAATTCAACT | AAATGAGGAT | 1680 | |||||||||
| 1681 | CTAAGTAAGC | AGAAAACAAA | AATTGCAGTT | TTGAGTGATG | AAATTGAAAA | TCAGAAACAG | 1740 | |||||||||
| 1741 | AAAAACAATG | AATTGAGAGA | AAAGAATTGG | AAAGCTATGG | AGGCCTTAAC | AAATGCTGAA | 1800 | |||||||||
| 1801 | AAACATGCTG | AACAGCGAAT | CAAAGAAATC | CAGACAACTG | CAGACCAACA | AGTAGCACAA | 1860 | |||||||||
| 1861 | TTAGAAAAAG | ATGTTGTTGC | TTCAAAGAAG | ATTTCTAGCA | CAAGCAGTGA | ATCATCTCCA | 1920 | |||||||||
| 1921 | GAACTCACTG | AGAAGTTAAA | AAAAGCTGAA | AGTGAGGCAG | CTCAGAGATT | ATCAGATTAT | 1980 | |||||||||
| 1981 | AATAAAGAAT | TAGAAAAAAA | TAGACATTTA | TCATCTGAAA | TCAATAAATT | AAATGAGTTA | 2040 | |||||||||
| 2041 | CACAGTAATA | GAATAGCGGA | AGCACAGAAA | AATGTAGAAG | AATTAAAGTC | TGAAATTGCA | 2100 | |||||||||
| 2101 | GAGTCTCAGT | TAAGAACTAA | AGAATGCCTT | CAGAGGATAT | GTCCTAGTGT | ATCAATTGAC | 2160 | |||||||||
| 2161 | AGCTCTTTGC | CATTTGAAAA | GTGGTTGTTA | GAATTTGAGC | AGCAAGCCTC | TGTAGTAATT | 2220 | |||||||||
| 2221 | ACTTCTGTAT | CACAAAGTGC | AGAATCTTCT | GTAAATTTTG | AAGAACTTCT | GGAGCAGAAA | 2280 | |||||||||
| 2281 | GAAAATGAAT | ATTTACAAAA | ACAACGACAT | TATGAAGAAG | TTCTTGCAGA | AACGGAGTCC | 2340 | |||||||||
| 2341 | ACTTTATCAA | ATCTGCAAAG | AAGTGCTGAG | GCACAAGAAG | TTCATTGGCA | GGAGAGGTTA | 2400 | |||||||||
| 2401 | AGAAGTAAAG | AGCAAGAGCT | TGAACAGATT | AAATCTGAAA | GAGATGCCTT | AGCTGCTGAA | 2460 | |||||||||
| 2461 | AAGGAAGCCA | TGCAGTCTAC | ATTCCAGCAA | ATAAGCCAGT | TAGAGGAGCT | TCAAGAGAAG | 2520 | |||||||||
| 2521 | CTTAAACTGT | TACAAAGTAC | TCTTGAAAAT | GCTGAAAATG | AAAGGTCACA | TTTAGAGCAG | 2580 | |||||||||
| 2581 | AAATATGAAG | AAGTTCATAA | GAATTGTTTA | AATTTAAGAG | ACCAACTAGA | AAACAAAGAG | 2640 | |||||||||
| 2641 | AAACAAATTT | TAGAGCTTCA | AAAGGAATCT | AATAGCCTTG | ACAGTTTAAA | CAAGGAAATT | 2700 | |||||||||
| 2701 | GAAGATTTGA | AGTCAAAATT | AGAGAAAGAG | AAAAAAATAA | GCAAAGATTT | CTCATCTCAA | 2760 | |||||||||
| 2761 | ATGATCAGAT | TAAATTCCCT | AGTAAAAATT | GGACAAGATG | CCCTGAAAGC | TGAGCAAGAA | 2820 | |||||||||
| 2821 | ATGGTAAAAA | AATTAAAAGG | ACAACTTGAA | GGGTCACAGG | TATCTACAGC | TAATGGAACT | 2880 | |||||||||
| 2881 | GCATCTGCTA | CCAAAGCAAG | CCCAGTCACT | GTTAATGAGG | ATGCTTCGGA | TAAAAAA | 2937 | |||||||||
| Single Nucleotide Polymorphisms | ||||
| 168 | G= 0.79 | A= 0.21 | ||
| 394 | A= 0.87 | T= 0.13 | ||
| 922 | C= 0.86 | A= 0.14 | ||
| 2317 | G= 0.56 | C= 0.44 | ||