CSH_0037_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGGCAGACA | GTAGAGATTT | ATCGGATGAT | TCTGATAGTT | ACCTAAAAGA | AGAGTTGGCA | 60 | |||||||||
61 | AATGTAGAAG | AACTTCTCAT | CAGTAGCAGG | AAAGAATGTG | TTGAAATTGG | TTCTAAATAC | 120 | |||||||||
121 | GAAGATTTAA | ACAAACAAGT | TCAAGAATTA | AAAAAATTTC | AAGAAGAAAT | TGAATCAGAT | 180 | |||||||||
181 | GAATCTGTCA | CAAGTGAACA | ATCTGAAACA | CACAAAGAGT | TTAGATACAG | TATAGAGGAA | 240 | |||||||||
241 | CAATTAAGTA | AATATGAAAG | CCAAATTGCA | ACATACCAGC | ATACACAAGC | ACGTCAGGCA | 300 | |||||||||
301 | GAAATTGTTG | GAGATCTCCA | AAGCAGAATC | GAACAGTATC | GTTTACGATG | TGCCAAGTTA | 360 | |||||||||
361 | GAAGCAGCTT | TGGCTGAACA | GAAAGCACGT | GAAGCAACCA | TTGAAGAATC | AGAATCTCAT | 420 | |||||||||
421 | GCTCAAAATG | TGTTTTCAAT | GGATCTTGAT | ACTGCTTTGA | TTAGATTAGA | GCAAGAAAAG | 480 | |||||||||
481 | AACAGATGCC | ATGGTTTGAC | TGAAATCAAC | AAATTATTAA | GAGAACAGTT | GGAAACTGCC | 540 | |||||||||
541 | ACTGAAGTTA | ATCAAACTCT | TACATCTGAT | GTTCATCGTT | TGACTAAAGA | GTGGCAGCAT | 600 | |||||||||
601 | GCTAGATCAG | AGTTACTTGC | TAAAGAATCA | GAATGGAAAG | AAGAAGAGCA | GTCAATCAGC | 660 | |||||||||
661 | ATGTATTTCA | CAAAAGAGAG | CAATATACTC | CTCTCCTTTT | GGCGGCAAAT | TCTGAACTTC | 720 | |||||||||
721 | AAGCATGATT | TTGCTAATCT | CAAAAGCTCT | ACAGAAAAGG | ATTTGAACTC | TTTCAAAGTG | 780 | |||||||||
781 | TGTATATGTC | AGAATATTCA | GAATGTCATG | AATCTCCAAA | ACATAAACAG | CCATATATCC | 840 | |||||||||
841 | CAAGAGGGTG | ATTCCTTTTC | AAATTCAGAT | TTAAATGAAG | AGAGAAGAAT | TAGAAATGAT | 900 | |||||||||
901 | TTTGTTGCTG | AGAAAGAAAA | ACTTCAAGAA | AGGATAAATG | AGTTAATTGA | CAGAAATGAG | 960 | |||||||||
961 | AGAATTCAGT | GGCTTCTTGA | TGAGAAAGAG | AAAGTGAATA | CAACCCTGTA | TAGTACCATT | 1020 | |||||||||
1021 | GAAAAAATTA | ATACTTCTTT | TAAAAGCACT | GTTCATAAAA | CTGAAACTCA | TAAAAAGACA | 1080 | |||||||||
1081 | GTTACAACAG | AAAAAGTGTA | TAAAGAATAC | ATAAGTGTTG | TAAAATGTTT | GTCTGAAGTA | 1140 | |||||||||
1141 | CTGCAGGATG | ATCCTAAAAG | TGAAATTTCA | TCAAGTGTAG | TTCTGCATTA | TGATAACATC | 1200 | |||||||||
1201 | GACCAACTGG | AAACCATTAC | TGATGAAAAT | ATTTCACAGT | TTCAATCCAT | TATTTCAACT | 1260 | |||||||||
1261 | GTAAAGAATA | CATTAAAAAA | GTATAGCAAG | CAACTTGATG | AAGCAACTCT | AAATTTATCA | 1320 | |||||||||
1321 | TCCTTAGAAG | AACAGAATTC | AATGCAACAA | AGGACTATTG | AATTTCTTGA | AGAAGAAAGA | 1380 | |||||||||
1381 | GAAAAAATGC | AGCAGATGAA | TACAAAACTG | TCTATACAGT | TTGATTCCCT | ACACATGAAA | 1440 | |||||||||
1441 | GTTCAAGATT | TTCTAAAAGA | AGGTATAAAA | CCTGAAAATC | TTTCTGAAGA | TAATCGTTCA | 1500 | |||||||||
1501 | TCCTGTTTAG | ATGTGATGGT | GAAATCACTT | AATGATAAAA | TTGAAAGTTT | GAACTCAGAA | 1560 | |||||||||
1561 | AATTCTCAGC | TACTAGATGC | TCAACAGGAA | TTACAGTCAA | AGTTAAAAGA | TTTATATGAA | 1620 | |||||||||
1621 | GAAAAAAGGA | TGTTACTTGC | ATCTGAGCAA | AATTTAAAAT | TAGATGCTAA | CAAAAATTTA | 1680 | |||||||||
1681 | AAGAAGATTT | CTGTGCTTGA | AAAAAATATG | GATTCCTTGA | GGAAAGATTA | TTTGCAGACT | 1740 | |||||||||
1741 | CAAGAGCTTT | TGCAGCAGAC | AACTATAGAC | AAAGAGATTC | TTGAAGAAGA | AAAACAAAAA | 1800 | |||||||||
1801 | TTTGCAACCA | TTCTTTCTAA | TTTGGAACAA | CAATGCTTTG | ACTTAAAGAA | CTGTCTTCAG | 1860 | |||||||||
1861 | CAGCTGAAGG | ATGAGGAAAG | TGTGGTCCGA | GAAACCCTTG | TTAGTCTACA | AAGCTTAAGT | 1920 | |||||||||
1921 | GAATCACTTT | CATTGGAAAA | GAATGATTTG | TCACAACTTT | TAAATGATGC | TACAGCTGAA | 1980 | |||||||||
1981 | ATTGAAAAAA | TAAAAGAAGA | TCAGTCACAT | GAAAAAATAA | ATTATGAAAA | AGAGAAAAGT | 2040 | |||||||||
2041 | GAGATGAAAT | CAAAACTTGA | TGATTTGAAA | GAAAAATGTT | TGGGACTTGA | AAGTGAAAAT | 2100 | |||||||||
2101 | GAAAGGCTTC | AAAAGACTTT | ACAGGACATT | GAATCCATGA | AATCAAATAT | TGAAGAAGAA | 2160 | |||||||||
2161 | AAGAGTCAAA | TAAACCTTCA | TAACACTGAC | TTAACTAATC | AAGTTACAAA | GTATTCTACT | 2220 | |||||||||
2221 | CAAAAGAAGA | ACATTGAGAC | TGAATTAGAA | AAAGTTAGGG | AAGAATTAAG | GCAACAGTTA | 2280 | |||||||||
2281 | GGGATTACAG | AAAAAATAAA | TTTAGAAAAT | AATTCTCTGC | TTCGATCTAA | AACAGAATTA | 2340 | |||||||||
2341 | TCCATGAAAC | TTGAGACATT | GGAAACTGAA | ATGAGTGAAC | TGAATGATAT | TATTTTAGTA | 2400 | |||||||||
2401 | TTAAAGGAGG | AAAAAGCTAA | TCTTGAAAAA | GCACTCTTTG | ATGCTCAGAA | ATCAAAAGCC | 2460 | |||||||||
2461 | GCACTTCAAG | AGGAAAAGAC | AGATTTAACC | AGAGACTTGG | ATTTACAGAA | AACTTCTCTA | 2520 | |||||||||
2521 | TCCAGCCTTC | AAGCTCAAGT | CAAAGAACTA | CAAGATCTCC | ATAAAAAGTA | TGTTGATGAC | 2580 | |||||||||
2581 | ACTGCTAAAG | AAAAAAATTC | TCTCATGATG | AAGATGCAGG | AAATTGAACA | AGAATTTCAA | 2640 | |||||||||
2641 | ATCACTCTTA | AGAATGAACA | ACAACAGCAT | AATGTTGATA | TTGATATTTT | ATCACAAGAA | 2700 | |||||||||
2701 | AAAGAATCTT | TGCGAGCACG | ACTGGTTGCT | GCTGTCGATG | AACTTATTGC | AAGTCATCAG | 2760 | |||||||||
2761 | AAACAACAAG | AGGAATTAAT | AAGTGCTCAT | CAAGAAGAAG | TTGCAGCTTT | GAAAAAGCAA | 2820 | |||||||||
2821 | ATTTCATCTC | TTGAACTTGA | ATGTGATGAA | AAAAGGCTTC | TACTTCAAGC | TGAGAAGAAA | 2880 | |||||||||
2881 | AAGGTTGATA | ATGGTTACAG | AGAACAGGTT | TCATCTCAAG | AAAATACTAT | TGAAGAACTG | 2940 | |||||||||
2941 | AAGCAAGAAC | TGTCTGAAAA | TGAATCTTCA | ATAGCTGCCT | TGGAGGAGAA | AGTCAGGCAG | 3000 | |||||||||
3001 | TGTGAAAATG | ATAAAGAAAA | AATAATCCAA | GAAAATATGC | AAATACAGCA | GACATTAAGA | 3060 | |||||||||
3061 | GATGAAATTA | ATAGTATCAA | AACAGAAAAT | TTGAAAAGCA | TTAAGGAATT | ACAAAACCAA | 3120 | |||||||||
3121 | ATAAGAGATT | TAAAGGAACT | TAAAGAACAA | GCTGAGGAAA | ATGTAGATCG | ATTGCAAGTT | 3180 | |||||||||
3181 | CAAGTTAAAG | AAATTGAAGA | TGAAAAATAC | AAGGTCTCAA | AAGAATTGAA | TGAAAGTAAT | 3240 | |||||||||
3241 | TCACACTTCA | AAAGTGAGAA | GAATTCAATA | TCTGATTTAG | AAGACAGAAT | AGCATTGCTA | 3300 | |||||||||
3301 | CAAAATCAAC | TTAGTGATGA | AAAAAGTTTG | AGTGAAGTTA | TTAGTAAATC | TCTCGATGAC | 3360 | |||||||||
3361 | TGCAAGCAGC | GGTTAAAAGT | AACACAAGCA | GAAAATGTTG | AATTAAAAGC | TCAGGTTGAT | 3420 | |||||||||
3421 | GAAGCTAATC | AGCAAATTAA | TGTCATGGAA | AACAGCAGCA | GTAAAAAATT | GTCTCAAAAT | 3480 | |||||||||
3481 | ATTGAACTGA | AAACTGCTTT | AAGGGATATT | GAAAGGTCTC | GCTCTGATTT | AAAAAGAGAA | 3540 | |||||||||
3541 | GTTACTACTT | TGAAGAAAAA | ACTAAGTATT | CTTGAAAGCA | CATTGAAAGT | CAGAGAACAG | 3600 | |||||||||
3601 | GAGATTTCAG | AATTAATAGC | TCTTCGTAAT | AATGATGAGA | CTAAGGAAGA | TGAATTAAAA | 3660 | |||||||||
3661 | AAGGTGATTG | TTTCCTTAAA | GCAAAAACTA | CTAGAAGCAA | GTGCATCAAG | TGAAGCCCTG | 3720 | |||||||||
3721 | ATGAAAGAGA | TGATAAATTC | TAAACAAAAG | CTCTCTGGTA | TGGAACACAA | ATTGAAAATG | 3780 | |||||||||
3781 | CAACAAGAAC | ATCATCATTC | AGTTCTTCAA | GAGTCTCTAA | GTAATGAACA | GACCTTATCT | 3840 | |||||||||
3841 | GAATATCGAC | TGAATTTAGA | GAGGTCAATG | GTAGATGCTA | ATAAAGAAAT | TCAGCGATTG | 3900 | |||||||||
3901 | CGGTCATCTT | TGAATTTTGA | GGAAGGAAAA | GTTCTTGCTT | TAGAATCCCG | AGTTGTGAAA | 3960 | |||||||||
3961 | TTAGATGGAG | CCAAGAGAGA | TGTTGAAAAC | AAGTTATATT | CCATTTGCCT | GTTCCTCCGT | 4020 | |||||||||
4021 | TCAGCTCTTG | GTCTTGGATC | TGATAGTGGA | TTTTTGAGTA | TCTCTACTAA | TATGCCTTTC | 4080 | |||||||||
4081 | AGTCCTATGC | TGTCCCAGAA | GTCTGAAAAA | TCTGTTGATT | CCTCCAGATC | ATCAAGGGAA | 4140 | |||||||||
4141 | AGCCCTCATA | GGCTAAACCT | TTCCAAAGGT | AGCTTTTGCA | TATCTGACCA | CGATATTGAT | 4200 | |||||||||
4201 | TTGTTGAGGT | CAGCCCTAAT | GGAGATGGTA | GAAAAATACA | GCAGTACTGA | AAAGGAAAGG | 4260 | |||||||||
4261 | GATGACCTAA | AAGATTCTGT | CACAAGGCTT | CAAAAACAAG | AGGAAGAGTT | ACGAAATGAA | 4320 | |||||||||
4321 | CACAGTAGAT | GCAGTGCTAA | AATTTACCAA | CTGAAAAGAG | ATTTAGAAGA | TAAGAAAAAT | 4380 | |||||||||
4381 | GTAGAAAAAG | ATTTGGCAAC | TAAAATTGCT | AGCATTCATC | ACCATGAAGA | AGTTATTAGA | 4440 | |||||||||
4441 | ACACTGGAGA | GAGAAAAGAG | AAGACTGACA | GAGAAAGTAG | GAAATTTAAA | CTTCAACTTA | 4500 | |||||||||
4501 | TCTGCTGTAA | CCAAAGAAAA | AGAAAATTTG | CTTGAAAAGA | TTGAAGAAAC | AAAAAGCAGC | 4560 | |||||||||
4561 | ATATTAAATC | TTGAACAAGA | ACTGAAAACT | GTGACAACTG | CCAAAGAACA | TGCTGAAACC | 4620 | |||||||||
4621 | AAAGCTTCTA | AATATTATCA | ATCTTATCAG | TATATTGAAA | CTGACATATC | AAGTTTTAAG | 4680 | |||||||||
4681 | GACGCTATAG | TTAATAAAGA | TAAAGAAATT | AGATCTTTAG | AACATAGTTT | ACAAACTACT | 4740 | |||||||||
4741 | AATAAAAAAT | TCTTATCATC | TGAAAATCGA | AATAAAAATC | TTCAAGCAAC | TATTGAAAAA | 4800 | |||||||||
4801 | CTGAATTCAG | CTATTGAGAA | ACATATAGAT | AATGAACAGT | TATTGCAGCA | AAAGGTAAAT | 4860 | |||||||||
4861 | GGTTTAAGTA | ATGCGCTGTC | ACAGAACTCT | GATACACAAC | AGAATTTTTA | TCAGGAATTG | 4920 | |||||||||
4921 | GAGAAAATAG | GGAAAGAACG | TCGTAAATAC | CAAAATGAAA | TATCACTTCT | ACAGCAGTCA | 4980 | |||||||||
4981 | TTAGACAAGA | CAAAAAATTT | AGTTGATGAC | TATGAACTGA | AGAATAAAAT | TTTGCGAGAT | 5040 | |||||||||
5041 | GAAGTGGAGG | ATCTCAGGAG | AAGTTTGAAC | CAATCCCAAG | GAAAAGATGA | AGAAAAAATT | 5100 | |||||||||
5101 | AGGAATATGC | AAAATCTTTT | ACTAAAAACA | AAAGAATTTG | AGAGAGACTC | CAACCAGCAG | 5160 | |||||||||
5161 | TTGACTCATC | TACAAATTCA | GAAATCGAGT | CTAGAGAAGA | AAATATCTGA | ACTCAGTACT | 5220 | |||||||||
5221 | TCTCTAAGAG | AGTGCAAAGA | AAATCTCCTT | ACTAAAGAAG | AAATTTGTAT | AGTGTTGGAA | 5280 | |||||||||
5281 | AAAGAAAAGA | AATCTCTTCA | AAGATCTCTT | GAAAGAGTAG | AAAGAGAAAA | ACAAAGAACA | 5340 | |||||||||
5341 | AGTGAGGAAA | CAGCAAAATC | TCTTTTAGAA | AAGAGTTCTT | TAGGTCGATC | ATTAACAAAA | 5400 | |||||||||
5401 | ATGGAAATTG | AAAATGCTTC | TTTGCAGGAA | AAAGTTCAGA | ACTTACAAGC | ACAACTTGCT | 5460 | |||||||||
5461 | GAACTAGAAG | AACGTCACGC | ACAAAGAGTG | AAAGACTTTT | TAAGGAGTCA | AAGTCTTGAA | 5520 | |||||||||
5521 | TCCAAATTAG | AGGATGACAG | ACTACGAACA | GCTTTAAAAC | AAACAGAACA | GTTAATGGAA | 5580 | |||||||||
5581 | GCTCGAGAAA | AAACCCACCG | TCAAAGGGTT | CTAGGCCTAG | AAGAACAAAT | TGCTGTCTTG | 5640 | |||||||||
5641 | AAAAATCACC | TAGAACGGGA | AAAACTCCGA | TGGCAACAAT | ATCATCAACG | GTCTCTGACT | 5700 | |||||||||
5701 | GCCAATGCTA | ATATTAATTA | TTTACATTCT | GTTCTCAGTA | AATCCCTTCA | GAATGTATCT | 5760 | |||||||||
5761 | GATGATCCCC | AGAAACTTCT | GCCTGAGGCT | GAAAGGCTGG | ACTTGACAAC | AGAAATTGAG | 5820 | |||||||||
5821 | CTTAGTACCT | CTCCTGGCAT | TTCAGTCTCA | ACTCCGTCCA | AACTATCACA | GTCAACATCA | 5880 | |||||||||
5881 | CACACACAAA | AGACATCTAC | ACCCAAAGCA | AAAAGACGTC | TTGACTTATC | ACCAAAGACA | 5940 |
Single Nucleotide Polymorphisms | ||||
2282 | G= 0.55 | A= 0.45 | ||
2775 | A= 0.51 | G= 0.49 | ||
2997 | G= 0.66 | A= 0.34 | ||
3456 | C= 0.70 | T= 0.30 | ||
4570 | C= 0.54 | T= 0.46 | ||
4684 | G= 0.60 | A= 0.40 | ||
5664 | A= 0.63 | G= 0.37 |