CSH_0095_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGGAGAAGC | AACCTCAGGC | GGATCCTTCC | CTGAAGACGC | CTGTGTCCAA | ATCGCCGCTT | 60 | |||||||||
61 | CCTGAAGACG | ATGGGAAGTT | ACTAGATGGC | AAGATTGGGG | ATATCAATGG | AACTAAAACT | 120 | |||||||||
121 | GACCAAAGCT | TAGACTCAAA | AGACAGCTTA | AAATCTACAT | CATATCAAGA | GAGTAAAACT | 180 | |||||||||
181 | AGTTTAAAAG | AAGAAGAAAA | GCCAGTAGAA | AGTAAATCAC | ATATAGATAA | AAAAGAAATT | 240 | |||||||||
241 | GTAGAAGATA | GTTCATTAGT | AGCAGAAGAA | AAGTTATCTC | ATTCAATCAT | ATCAGTTGAC | 300 | |||||||||
301 | ATTCAGAAAA | GCATGCCTTG | TGATACCAAA | GAAACAGTTC | CTCATGACAC | AAAGCCGGAC | 360 | |||||||||
361 | ATTAAACGCG | AAACAGATGT | GTCACCAGAA | GTTTTAGCTT | CAGTGGTTAC | AAATGCTGTA | 420 | |||||||||
421 | GTTAATGAAG | CAGCCTTGAC | GGTTAGTGAA | ACAAATGGTG | TGACTGTAAA | TGGTTCAACA | 480 | |||||||||
481 | ATTACTAAAG | ATTCATCCAA | AGTAGATGCC | GTAGTAGAAC | AAGAATTAAC | TAAAATAAGT | 540 | |||||||||
541 | GACTCTAAAG | GTGTAAAAAC | CGATGCAAAA | TCTTTAATAA | CATCAAATGG | TGATTCAAAG | 600 | |||||||||
601 | CCTATGCTTA | ACGGTGATAT | AGACCATTCT | CCTGTCCGCG | ATGGTGTTTC | AGATGTGTCT | 660 | |||||||||
661 | TCAAAATCCG | ACAAGGATAT | TAGTTCGAAA | CAAGAAAGTT | CAGTGTCTTT | AAAGGAGGAA | 720 | |||||||||
721 | ATACTGGCCT | CAGAAAAGCA | GGTATCAAAA | GAATCCGATC | AAACACAGGA | AACGGAAAAA | 780 | |||||||||
781 | TCTAAACAAT | CAGAGAGTAA | AGTTACAGAA | AAAATAGAGC | AAATAGAAAT | AGGATCTTGC | 840 | |||||||||
841 | AATGGTGTTC | CAGGGATAAT | AACTGTAGAA | TCTATTACTA | AAAAAGAAAC | TGTCAGCAGC | 900 | |||||||||
901 | TCGGTAGAGC | CTGAAAAACC | AAAAGCAGAC | ACCAGTCAAA | CAACAGAAAC | AAAACAAGAA | 960 | |||||||||
961 | ACAAAACAAG | AAGTAAAGCC | AGTAGATGGC | AGTTCTGTTG | TTGACAAAGT | AGCAGACAAA | 1020 | |||||||||
1021 | ACTGAGGAAA | AAGTATCAGC | AAAAGTAGAC | GAAGTAACTG | CTTCACCTAA | GAAAACTGAC | 1080 | |||||||||
1081 | GGGAAAATAA | GTGATAATCT | AACAGATAGT | GCTAAGTTGC | GCAAAGAAAA | TTTAACGGAT | 1140 | |||||||||
1141 | AATGCTAAAG | AACAAGTTAG | TGATTCTAAA | ACGGAGGAGG | ATAAAAAGAC | ATCCGTTGCA | 1200 | |||||||||
1201 | AAAGAGACCA | AGGAGGATAA | AGTTTCCGAT | GCAAAAGTGT | CCGATGCAAA | GCCTGAAGAA | 1260 | |||||||||
1261 | AAGAAAGATA | GTGGAAAAGA | AAAGGAAACA | ATTGAACAAA | AGGATAAAGA | TAGTAAAACT | 1320 | |||||||||
1321 | TCTTCTCCCG | CTAAGCGTCC | AGAAGTAACA | ATTTCGCAAG | TGCCAGAAAC | TACAGAAAGT | 1380 | |||||||||
1381 | AAAGTAAAGA | CAGACCAAAA | ACCATCAACT | GAATCCAAAG | AGGATGCAGA | AAAAGCAAAA | 1440 | |||||||||
1441 | CAGATTGATT | TATCCCAAGA | ACCCGTTAAA | CAAACCGAAG | AAAGCAAAGA | AAAAGATAAA | 1500 | |||||||||
1501 | AAAGATGAAA | AAGGTAAAGA | TATTTCAAAA | AGCGACACAG | TGGATACGAC | AGAAAAAGCA | 1560 | |||||||||
1561 | AAGAAGGCTA | ATGATAAAGA | TAAAAAACAA | ATCGTTGAAC | AAGAAGAAAG | TACTCCAGTG | 1620 | |||||||||
1621 | TCTGAAGACA | AGAAGGCTAG | CAAAGAACCT | TCAGAAAAGA | CGGATACAGT | GAAAGAAATT | 1680 | |||||||||
1681 | GATGAGCCTG | TGAACAATAA | AGAAAAGTTA | AAAGATGACA | AAGCAGAAAA | ATCTCCTTTG | 1740 | |||||||||
1741 | CATGATGTGA | AAGCTGAAAA | AGAAGAAAGT | AAAGGAGAAA | TCAAAAAAGA | ATCTGGTATT | 1800 | |||||||||
1801 | TCGAATGAAA | GGCTCGATAG | AGAAACTACA | GACACGAAAG | AATTATCTAC | AGAAGAAATC | 1860 | |||||||||
1861 | TGTGATATGA | CCGCAATGAT | GACTTCACAG | ATCCTTACTC | CAGCAGATCT | TGGAATAGAA | 1920 | |||||||||
1921 | GAAAGTACCG | AATCGTTAAA | GTCCGAAACT | GATGAAGGGG | AAAAAGTCGA | TTCGAAAGAT | 1980 | |||||||||
1981 | TTAACTTCGA | AAGAAAGCTC | TATATCGGCT | ACAATAGTTA | ATGGTAAAAC | CTGTGATGTT | 2040 | |||||||||
2041 | GCTGTGGGAT | TAGACGAAAG | AAAAATGGCT | CGAGTGGCAG | CACCAGATGG | AGAAGAAGAA | 2100 | |||||||||
2101 | GAAGTCGATG | GTCAGCAAGC | AAGTGCCGAG | GTAGAAGTAA | CAGAAGATGC | GACCGTCCCT | 2160 | |||||||||
2161 | AATGGAGAAA | ACGAAGGAGA | TAATCTCATA | ACTAATGGCA | CCGGAAGTCC | AGCCAGTGGT | 2220 | |||||||||
2221 | GCACCAAGTT | CGCCAACATC | TGCCAAATCG | TCTTCAGCAG | CTTCCAGTAA | ACCTGCTTCT | 2280 | |||||||||
2281 | GCAGCAAGCC | AAAAAGCAGA | ATCCAAAAAA | GAAGAGGAGG | TTAAGCCACC | TTCTGCTGTT | 2340 | |||||||||
2341 | TCCAGGTCCT | CCATTCCTGA | ACCTATTGTT | TATGAACCTC | CAGAAAGAAG | GAAATCAGCA | 2400 | |||||||||
2401 | GCATCCGTTA | CTAGTGATGG | TAAAAAAGAT | CCAGGCGCTG | ACAAATCCCA | ACTCGACGAG | 2460 | |||||||||
2461 | AAGGAATCGG | AGAAAAAAGA | TAAACAAGGT | GAAACAGATT | CTGCCAAGAA | ATCAAGGGAA | 2520 | |||||||||
2521 | GCCACTCCTG | AGCCAGATAA | GAAAGACGTT | GATAAAGATG | ACAATAAACT | TAAAGAGGAA | 2580 | |||||||||
2581 | GAAAAAGAAG | CATCTACTGA | GAAGGAAGAA | AAGTCTGAAA | AAGAAAGTGT | GTCTGGTAAA | 2640 | |||||||||
2641 | GCAACACCAG | CAGAGAAAGA | AGCAACATCG | GGAAAATCGA | CACCAGTAGA | GAAAGACGCA | 2700 | |||||||||
2701 | TCAGGAAAAT | CAACACCAAT | AGAGAAAGAA | ACATCGGGAA | AAGCAACGCC | AGTAGAGAAA | 2760 | |||||||||
2761 | GAAGCATCAG | GAAAATCAAC | ACCAGTAGAG | AAAGAAGCAT | CGGGAAAAGC | AACACCAGTA | 2820 | |||||||||
2821 | GAGAAGGAAG | CATCAGGAAA | ATCAACGCCA | GTAGAGAAAG | AAGTATCAGG | AAAAGCAACG | 2880 | |||||||||
2881 | CCAGTAGAGA | AGGAAGCGTC | AGGAAAATCA | ACACCAGTAG | AGAAAGAAAC | GTCTGGAAAG | 2940 | |||||||||
2941 | GCAACACCAG | TAGAGAAAGA | AACGTCTGGA | AAGGCAACGC | CAGTAGAGAA | AGAAACGTCA | 3000 | |||||||||
3001 | GGCAAATCAA | CACCAATAGA | GAAAGAAACA | TCAGGAAAAG | CAACACCAGT | GGAGAAAGAA | 3060 | |||||||||
3061 | ACATCAGGAA | AATCAACGCC | AATTGAGAAA | GAAACATCAG | GAAAATCAAC | GCCAATTGAG | 3120 | |||||||||
3121 | AAAGAAGCGT | CAGGAAAATC | AACACCAGTA | GAAAAGGAAG | TGTCCGGAAA | ATCAACGCCA | 3180 | |||||||||
3181 | GTAGAGAAAG | AAGAGGCGTC | AGGAAAAGAA | ACACCTTCCA | AGAAGGAAGA | TGCATCAGAA | 3240 | |||||||||
3241 | AAAGAAACAA | CTGCTGATAA | AGATTCTGTT | TCGGAGAAAG | AAGATATTTC | TCAAACAAAA | 3300 | |||||||||
3301 | TCTGCTTCAG | AAAAAGAGGC | CGTCACGGAT | GAAAAAGTTT | CTGAAAAGGA | AACATCTGTC | 3360 | |||||||||
3361 | GAAAAAGAAA | TTGCACCTGA | GAAAGTGACG | ACAGATACAA | AAGAAACTCC | TGAAGAAAAT | 3420 | |||||||||
3421 | AAAGAAGCTT | CAGGAAAGGA | AGCACCTGCT | GAAAAAGAAA | TATCAGAAGA | GAAAGAAACT | 3480 | |||||||||
3481 | TCTGTTGAAA | AAGAAGCATC | GGAGAAAGAC | GCCGTCTCGG | AAAAAGAGGA | AACCCCAGAA | 3540 | |||||||||
3541 | AAAGACACAG | AGAAACAAGG | AGATGGCGAA | AAGGAATCAA | CGAAAGAGGA | TATGGCCGAA | 3600 | |||||||||
3601 | TCTTCTAAAG | CTGAAAAAGA | ATCTTCTGAT | AAAGAGAAAG | GAGAAGAGGA | TGCAACAGAA | 3660 | |||||||||
3661 | AAAGAAAGCG | TTGACGAAAA | TATAAAAGAA | TCAGAAGATG | TCAGTAGCAA | AAGTGAAAGC | 3720 | |||||||||
3721 | GACACAAAAG | AATCACTTGT | TGAAAGTGAA | AAAGAGGTTC | CCAAAGAAAA | AGATTCGAAA | 3780 | |||||||||
3781 | GCAGAAGAAA | GTACTGAAAA | AGAAGAAGAA | AAAGGAGAAA | CAAAAGAAGA | AGAAGAAGCA | 3840 | |||||||||
3841 | AAAGGTGAAG | GAAAAGAAGA | AGAAAAAGAA | GAAGAAAAAG | AAAAGTCAGA | GGAGAAAGAG | 3900 | |||||||||
3901 | GCAGAACCCG | AAGCCGAAGC | GAAGGAAACG | CCAGAGGATA | CTTCTGAGAT | TAAGAAAGAA | 3960 | |||||||||
3961 | TCCCCCGCTA | GTAAATCACC | CGAACCAGCA | GGTGCTGAGG | AAAAGGACTC | GGAAACTGAA | 4020 | |||||||||
4021 | GCAGCTGACA | AAGAACCAGA | AGAGGCAGCT | GCTGCTGTAC | CCGATACTGC | TGAGAAAGAT | 4080 | |||||||||
4081 | GAAAAAGAAG | AAACTAAAGA | AGAAACAGTA | GAGGCTGCTG | AGGAAGAGAA | AGCTGAGGAA | 4140 | |||||||||
4141 | AAAGAAGAGA | CTTCAGAAGA | ACCAAAAACG | TTGATTGAAG | AGTCAAAGGC | CGAGGAGATT | 4200 | |||||||||
4201 | TCAGAAAAAG | AAACGGCTAA | GTCCGAAGAA | AAAGAGGAAG | ACGACACAGA | GAAAGAAGCT | 4260 | |||||||||
4261 | ACGCCAGATG | AAGAGGAGAA | AAAAGAGGAA | AAAGATGAGG | ATAAAAAGGA | TGAGGAAATT | 4320 | |||||||||
4321 | GCAGAAGATA | AAGGAGAGGA | AAAGGAACCG | GAAGCAGAGG | TTGCCGAAGG | TGACCAAGAA | 4380 | |||||||||
4381 | GAGAAACCTG | AAGATAAAGA | TGAAGGAGAC | CAAAAAGAAG | AGGCAGATGT | AGAGGCAGAA | 4440 | |||||||||
4441 | AAAGGAGAAA | AGGAGACAGA | AGAACAGGAA | AAGGGGGCAG | AAGAAGAAGC | TGCCACTGAA | 4500 | |||||||||
4501 | GCCAAGGAGG | AAGAAGAAAA | AGGAGAACAA | GAAGAAGGAG | AGGAGAAAGA | GAAAGCTGAA | 4560 | |||||||||
4561 | AAAGAAGCCG | AACAGGGTGA | GGAGCAAGAA | AAACAAGATG | TAGGAAAAGA | AGAAAAAGAA | 4620 | |||||||||
4621 | GAAAAAGCTG | AATCACCTCC | ACCGAAATCT | CCGACTAAGC | GGTCAGGCTC | TCCAACGAAA | 4680 | |||||||||
4681 | GGCGGAAGAA | GAGGTGTATC | TCCAATAGCT | TCACCACCCA | AAGCCCTAAA | GAAGCCACAA | 4740 | |||||||||
4741 | AAGTCCACTT | CGCCGAAGAA | GAAAAATGGC | ATGCTTTCTC | CAATAAAAAC | TCCCAAAACA | 4800 | |||||||||
4801 | CCTGGATCAG | ACGGAAGAAA | ACTGCCTCCA | ATCAAAGCTC | CTGTAGGATT | AGCACCAAAC | 4860 | |||||||||
4861 | CCTAACTTAA | AGAACATTCG | ATCAAAGATA | GGATCCTTTG | ACAATATACG | GTATAAACCT | 4920 | |||||||||
4921 | GGAGGTGGAG | ACAAAAAGGT | AATTACAAAG | AAACTTGAGT | GGAAGGCAGC | TCCCAAAATT | 4980 | |||||||||
4981 | GGATCTCTAG | ACCACTCACA | CAAAGGAAAG | CATGGAAAAG | GTTCTAAAAG | TGAATCAAAA | 5040 | |||||||||
5041 | GAAGGAAAAG | TAGTCGATGG | TCAGAGTCCT | TTGCCATCCG | GTGATGAAGG | TGATGGAGAG | 5100 | |||||||||
5101 | GGAACTGCTG | CAGGAGTTGC | AGAAACTCTT | ATTAAGCCAG | ACGGAGCAGG | TTCTACAGAA | 5160 | |||||||||
5161 | ATGCCATCCG | CGATAGCTGC | TGAATCT | 5187 |
Single Nucleotide Polymorphisms | ||||
798 | T= 0.56 | C= 0.43 | A= 0.01 | |
990 | C= 0.68 | T= 0.31 | G= 0.01 | |
1142 | A= 0.58 | G= 0.42 | ||
1289 | C= 0.53 | T= 0.46 | A= 0.01 | |
1326 | T= 0.60 | C= 0.40 | ||
1512 | A= 0.85 | G= 0.15 | ||
1646 | A= 0.52 | G= 0.48 | ||
1783 | A= 0.70 | G= 0.30 | ||
2076 | G= 0.67 | T= 0.33 | ||
2548 | G= 0.82 | A= 0.18 | ||
3294 | A= 0.90 | G= 0.10 | ||
3298 | A= 0.76 | G= 0.24 | ||
3760 | C= 0.80 | A= 0.20 | ||
3869 | A= 0.78 | T= 0.22 | ||
4137 | G= 0.86 | A= 0.14 | ||
4363 | G= 0.75 | T= 0.25 | ||
4364 | C= 0.74 | G= 0.26 | ||
4501 | G= 0.71 | A= 0.29 | ||
4581 | G= 0.78 | A= 0.22 | ||
4752 | G= 0.67 | A= 0.33 |