CSH_0116_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGGGGGGAG | ACGTGTCGAA | AAGGACTAGC | TGCTCATCCT | TTTACCTTTT | TTTGTGGTGG | 60 | |||||||||
61 | TCTGTGTTCC | TCATGTCCTA | TTCACAGTTG | CCCTCAGGTT | CCGTGGACTT | ACTGCGGGCA | 120 | |||||||||
121 | GTGAACATCG | ATAATGAACC | CCTCGGCGTC | CGCCAGTCCA | TCGGCATGTG | CGACAACAGA | 180 | |||||||||
181 | GCTCTCAGGA | TAGACGACGA | TGGAAACCCA | GTGTACGGGG | CCGCAGACAT | TGCCTACAGT | 240 | |||||||||
241 | GTCACTCAGA | CCGCGGTGCT | GACCGTTGCC | ACCTCTCAGC | TCTTCACAGG | AACCTTCCCG | 300 | |||||||||
301 | TACGACTTCT | CGGTGCTGGC | TACGATCCGT | CCGGAACAAG | GTACCGAAAC | GTATCTGTTC | 360 | |||||||||
361 | ACCATCTACA | ACAACGTCGG | CCAGGAGCAG | GTGACCGTCT | GGGTTGGCCA | GAACGTCACG | 420 | |||||||||
421 | TTCTCGTGCA | GGGAGAGCGC | CGAGCTCACC | TCCCTCGCCG | AGGTGTCCTT | CCCCGTGGCG | 480 | |||||||||
481 | GTCAACGACG | GAAAGTGGCA | CAGGATAGCA | CTGAGTATCA | AAGGGAACTC | TGTCACCCTG | 540 | |||||||||
541 | CTGAGTGAAT | GCGGCCAGCA | GCTGACGGAA | TCTCTGGAGA | GGAGCGAAGA | TGCCGTCATC | 600 | |||||||||
601 | GACACCACGG | GTATCATGCT | AATTGGTCAG | CAATTAGTAG | ATGGTGTGTA | TTACGAGGGA | 660 | |||||||||
661 | GACATTCAGC | AACTCCAGAT | CGTTCCCACT | CCAGAGGCAG | CTTACGAACA | GTGCGTGGAT | 720 | |||||||||
721 | TTCATACCTG | ACTGTGATTC | TCCTCTCCCT | TACTCCAGGG | GCCCAGAAGA | TACTGTATTC | 780 | |||||||||
781 | CCAGTTTTTC | CCAGTCCCGT | GCCTCCCAGA | CCGGAGAGGC | CGGATGAAGA | TGACGATGAT | 840 | |||||||||
841 | GACGACGATG | ATGATGACGA | TGATGATGAT | GATGAAGAAA | TCACGGATTA | CACGGATCCC | 900 | |||||||||
901 | TACGGCGTTC | CTGGCGTTTA | CAGCAACTAT | ACTCCACCGG | ACGAAGGAAA | TAACGCAGGT | 960 | |||||||||
961 | GAAAACACCG | GATACCATTA | TTACAATGTC | CAGGGATTGC | CTGGACCTCG | AGGATATCAA | 1020 | |||||||||
1021 | GGACCCCCAG | GTCCTCCTGG | AACAAAAGGA | GATAAGGGAG | ATCCAGGACG | AGATGGTCTG | 1080 | |||||||||
1081 | GGTGGACAAG | ATGGTGCAAT | AGGTCCACCA | GGTCATATAT | TTATGATACC | GTATCAACCA | 1140 | |||||||||
1141 | CAAGGAGACA | ATAAAGGACC | CGATCACACC | GAACCACTGA | GGCAAATGTT | GAGTCAACAT | 1200 | |||||||||
1201 | ATGCTTGCCA | TGAGGGGTGC | TCCTGGACCC | ATGGGTCTGA | CCGGCATTGC | CGGACCAGTG | 1260 | |||||||||
1261 | GGTCCCCCTG | GTTTTCAAGG | TCTTAAAGGT | GAGCCCGGAG | AATCAGGTGA | AGAGGGCCCA | 1320 | |||||||||
1321 | AGAGGTCTCC | GTGGTATGAT | GGGACACCCA | GGTAGACTAG | GTCGAAGGGG | TCCAGGAGGA | 1380 | |||||||||
1381 | AGGGATGGTG | AAAGAGGATC | ACATGGTGCA | ATGGGATCAA | AAGGTGATAT | TGGTTTACCT | 1440 | |||||||||
1441 | GGAATGCCAG | GTTTACCTGG | TGAAAAGGGT | GACAGGGGAT | TTACTGGTGC | TCAAGGAGAA | 1500 | |||||||||
1501 | CCAGGGCTTC | CTGGACATGA | TGGACCACAA | GGAGAAGAAG | GACAGCCTGG | TCCACCTGGA | 1560 | |||||||||
1561 | TTACCTGGAG | ATATGGGCCC | AAGAGGATTT | ATTGGTCCTC | GAGGATTTCC | TGGACTTCCT | 1620 | |||||||||
1621 | GGGCCACCTG | GAATTCCAGG | ATCTGAAGGT | GCACCTGGAC | CAAAAGGAAA | AGAAGGTCCA | 1680 | |||||||||
1681 | CCTGGACAGC | CTGGTCAACC | TGGACAGACT | GGAGCTGGAG | GTCCTTTGGG | CCCTCCTGGA | 1740 | |||||||||
1741 | CCCCAAGGAC | CACTAGGACC | ACAAGGACTT | ACTGGACCAA | GAGGCAAGCC | AGGTCTTCCA | 1800 | |||||||||
1801 | GGTTTAGCTG | GAGCAGATGG | ACTTCCTGGC | CCACCCGGAG | AACCTGGTAC | CCCAGGAGCT | 1860 | |||||||||
1861 | AAAGGTGATC | CTGGTGGACC | TGGACCTCAG | GGACCAATGG | GATTTCCTGG | ACAGCGAGGT | 1920 | |||||||||
1921 | GTTAAGGGTG | ACCAAGGAGT | GAGAGGACCT | GGTGGTGAAA | AAGGAGAAAA | GGGTTCAAGG | 1980 | |||||||||
1981 | GGTCAAGATG | GTCTTAAAGG | AGATTATGGC | CCAAAAGGAG | ATCTAGGAGT | TCCAGGCCCT | 2040 | |||||||||
2041 | GATGGTACAC | CAGGTATAGA | AGGTCCAGAG | GGTCCTAAGG | GCTTTGAAGG | CCCACGAGGT | 2100 | |||||||||
2101 | GAAATGGGAT | CCCCAGGACC | AACAGGTGAA | AAGGGTAAAA | TAGGAATCCC | TGGATTTCCA | 2160 | |||||||||
2161 | GGTTACCCTG | GGCACCCTGG | TGCAAAAGGG | GAAAAAGGAT | TCTGGGGAAA | GCCTGGAAAG | 2220 | |||||||||
2221 | AAAGGTGAGA | AAGGAGAAAG | GGGTCACTCT | GGTTTACCTG | GAGATAGAGG | TCCACAAGGT | 2280 | |||||||||
2281 | CCAAGGGGAA | ATCGAGGTGT | TCGTGGAAGA | CAAGGAAAAA | CTGGACCTCC | TGGTGACAAG | 2340 | |||||||||
2341 | GGTAGCACTG | GTGAACCTGG | ATCCCCTGGC | CCCATGGGTG | AGAGAGGCCC | CCAAGGTGTT | 2400 | |||||||||
2401 | CAGGGACAAA | GAGGATTTGC | TGGTCCCCCA | GGACCCCCGG | GCACAAGAGG | TAAAGATGGT | 2460 | |||||||||
2461 | GTGGCTGGAA | TGCCTGGTGA | ACGAGGACCT | CCGGGTGAAC | CAGGACCCCT | TGGACCACCT | 2520 | |||||||||
2521 | GGGCCCCCTG | GAGTTGTTGG | ACCACAAGGA | CCTGCTGGAG | AGCCTGGGCA | ATCTGGAGAA | 2580 | |||||||||
2581 | ATAGGACCAA | CAGGTATACC | TGGAGTTCCT | GGAGAACCTG | GATTACCTGG | GCCTGCTGGA | 2640 | |||||||||
2641 | AAAGAAGGAC | CTCCTGGTCC | TCCTGGACCT | GTTGGTGAGA | AAGGTCCAAT | GGGTGTTGTT | 2700 | |||||||||
2701 | GGACCTCCTG | GTTTCCCTGG | TGATAGAGGA | TTGCCTGGAC | CTGCGGGTGT | TCCTGGCTCC | 2760 | |||||||||
2761 | AAAGGTGATG | CTGGAGGTCC | TGGAGCTCCA | GGTATCTCTG | GTGAAAAAGG | AGCAGTGGGT | 2820 | |||||||||
2821 | TTACCTGGGG | ATCCAGGTCC | TCCTGGGGAT | AAGGGTAGAG | ATGGACCACC | AGGGCCCCCA | 2880 | |||||||||
2881 | GGACCATCTG | GTCCCAAAGG | AGATAAGGGA | GATTCTGGTT | TGCCAGGAAC | TCAAGGTCGA | 2940 | |||||||||
2941 | GATGGCTTGC | CAGGAAATAG | GGGACTGCCA | GGACCACCTG | GGCCAGCTGG | AACATCAGGA | 3000 | |||||||||
3001 | GAAGATGGCG | ATAAGGGAGA | TATTGGACCA | CCAGGACAAA | AAGGCATTAA | AGGAGCTAAA | 3060 | |||||||||
3061 | GGTGATAATG | GTCCACCTGG | ATCACCAGGA | CCCCAGGGTT | TGAGAGGAGA | GCCAGGTGCT | 3120 | |||||||||
3121 | GCTGGCCCAG | AAGGTGAGAG | AGGAATGCCT | GGACCTCAAG | GTGCAAGAGG | ACCTAAGGGA | 3180 | |||||||||
3181 | GAAGATGGAC | CTAAAGGACC | ACCTGGACCT | TCAGGTCCTG | CAGGTTTACA | GGGTCTGCCT | 3240 | |||||||||
3241 | GGACCAAGAG | GCCCTAAAGG | TGACAGAGGA | GATCATGGTA | AAGTTGGACC | ACCTGGACCT | 3300 | |||||||||
3301 | GCTGGTCAGC | CAGGTGAACC | CGGACCCACT | GGTTCAAAGG | GTGGTGAAGG | AATTGTTGGT | 3360 | |||||||||
3361 | CCACCTGGCC | CTGAAGGAAA | GCAAGGACCC | AAGGGAGAAG | ATGGAATGCC | AGGAACTCCA | 3420 | |||||||||
3421 | GGCCCCCCAG | GAAAAGATGG | AGAACATGGC | CCACGTGGAC | CTCCAGGTCC | GAAAGGAGAA | 3480 | |||||||||
3481 | GATGGTAAAA | TAGGTTTGCA | AGGACCACCT | GGACCCAGAG | GTCCACCAGG | AGGAGCTGGA | 3540 | |||||||||
3541 | CCTAAGGGTC | TTCCTGGTAA | TCCAGGTTTT | CCAGGGCCAG | CAGGTGAGCC | TGGTGTAGCT | 3600 | |||||||||
3601 | GGACCCAAAG | GTGCAACTGG | AAAAGATGGA | AATGATGGAA | ATGCTGGAGG | TCCTGGACCA | 3660 | |||||||||
3661 | CCTGGTCTTC | CTGGAGATGC | TGGTAAAATG | GGTGTTGCTG | GTGCACCTGG | AAAACCTGGA | 3720 | |||||||||
3721 | CCACCAGGAC | CTGCTGGAAA | ACAAGGTGAT | GTTGGACTTA | CTGGTGAGAA | AGGTGACAGA | 3780 | |||||||||
3781 | GGACCATTGG | GACCACCTGG | AGAGCAGGGA | CCTGCTGGAG | CTTCTGGCAA | TTCTGGATTA | 3840 | |||||||||
3841 | CCTGGACCTC | CTGGATTAAG | GGGATCTCCT | GGGCCTGCTG | GTGATGTTGG | TCCACTAGGA | 3900 | |||||||||
3901 | GCTGCAGGAC | CTACAGGCCA | ACCTGGGAAT | ATTGGTGCTC | AAGGTGACAA | GGGTACAAAA | 3960 | |||||||||
3961 | GGAGAAAGAG | GAAAACGAGG | ATTAAAGGGT | CATAGAGGAC | TGATTGGAAG | AGCTGGTATG | 4020 | |||||||||
4021 | AAAGGAAACC | AAGGGGAAAA | GGGAGAAAGA | GGTGAAAAAG | GTCCTCAAGG | TCCTACTGGT | 4080 | |||||||||
4081 | TTAAAGGGAG | ATCCTGGACC | ATCTGGCATG | GAAGGAATGA | AAGGAAATGA | TGGACCCTCA | 4140 | |||||||||
4141 | GGGCAGCCTG | GTCTTGAAGG | TCCACCTGGT | CCAAAGGGTG | CACAAGGTCC | TACTGGTCCA | 4200 | |||||||||
4201 | AAAGGTGATG | CTGGCCCATC | AGGACCTCTA | GGACCACCAG | GACCTCCTGG | TGAAGGACCT | 4260 | |||||||||
4261 | CAAATCCCTC | CAGAAGTGTT | ATTTCAACGT | GACTATCCCT | ACATGCGTCA | AAGGCGTAGC | 4320 | |||||||||
4321 | TTGGATGCAG | ATGAAGATCC | TGACAAGATA | TTTGAGAAGG | ATCCAAATAC | TGATGATAAA | 4380 | |||||||||
4381 | TCAGAAACTT | TACAAGACAA | ACTGCTCAAT | ATGTATGCTA | ATATATACAT | TATGAGGAAA | 4440 | |||||||||
4441 | GAGATTGATG | TCATTAAGAA | ACCTCTTGGG | ACAAGGAAGA | ACCCAGCAAG | AACTTGTAGA | 4500 | |||||||||
4501 | GATTTGTACC | TTGGTCATCC | TGATTTCCAT | GATGGTTGGT | TTTGGATTGA | TCCAAATCTT | 4560 | |||||||||
4561 | GGAATGTCTG | ATGATGCTAT | CAGTGTATTC | TGTAATATGA | CTGCTAGAGG | TCAAACTTGT | 4620 | |||||||||
4621 | GTATATCCCG | ATAAGCATGC | AGCTATGCAA | CCTGATGTTC | AGTGGAAGAA | AGAGAACATT | 4680 | |||||||||
4681 | GGTAAGAAAG | AAGTGTGGTT | TAGTTCACTT | AGAGGAGGTT | TCAGAATCAC | TTATGAAAAT | 4740 | |||||||||
4741 | GTTGGTCCTA | TACAGTTAAC | ATTTTTGAGA | CTTTTAAGCC | AAGAAGCTCA | TCAGAATTTT | 4800 | |||||||||
4801 | ACATACTCAT | GCACCAATTC | AATAGGCTGG | TTTGACCAAA | CTGCTAACAA | CTATGATTTA | 4860 | |||||||||
4861 | TCTATAAAAA | TATTGGGAGA | AAATGGTCAG | GAGTTTGGTC | CAAAGGGACA | GAAACCTCTA | 4920 | |||||||||
4921 | GTTCTTTATG | ATGGCTGCAA | AATTAAAAAT | GGATCCAACA | AATCTGTATT | TGAAGTGCGA | 4980 | |||||||||
4981 | ACAACCAGAA | TGAATAGGCT | TCCACTTGTT | GACTTCATGC | CAAAAGATTA | TGGGTCCCTA | 5040 | |||||||||
5041 | GATCAAGGAT | TTGGATTTGA | AATAGGACCA | GTGTGCTTCA | GT | 5082 |
Single Nucleotide Polymorphisms | ||||
540 | G= 0.82 | T= 0.18 | ||
843 | C= 0.88 | T= 0.13 | ||
858 | C= 0.88 | T= 0.13 | ||
873 | T= 0.89 | A= 0.11 | ||
1044 | A= 0.51 | T= 0.49 | ||
2247 | C= 0.68 | T= 0.32 | ||
4164 | A= 0.77 | T= 0.23 | ||
4200 | A= 0.61 | G= 0.39 | ||
4215 | C= 0.85 | T= 0.15 | ||
4338 | T= 0.68 | C= 0.32 | ||
4404 | G= 0.65 | A= 0.35 | ||
4482 | C= 0.84 | T= 0.16 | ||
4635 | G= 0.66 | A= 0.33 | T= 0.02 | |
4749 | T= 0.62 | C= 0.38 | A= 0.01 | |
4875 | G= 0.66 | A= 0.34 | ||
5004 | A= 0.73 | G= 0.27 |