CSH_0118_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGGCGACTT | TTTTCCGTTT | AGCACTCCTT | TATGTATTTT | GTTTATTATT | ACCTCTTAGT | 60 | |||||||||
61 | AACTGCAAAA | AGAAATCGTC | ATCAGCGAGT | GATGTGATTG | AAGAAGTCGA | TCGAAAAAAA | 120 | |||||||||
121 | CTTGAAAAAT | TGATTACGCA | AGAGGAATAT | TTAGCGGTAT | TTTTCTATAC | GAAAAGCTGT | 180 | |||||||||
181 | AAAGACTGTA | ATGTTATATT | AGAAGAATTA | GAACGTATAG | ACGACGAATG | CGGGGATTTT | 240 | |||||||||
241 | GGAGTGGCTT | TTGTGAAAAA | CAGCGAAAAG | TCAACAGCAA | AGAAATATGG | CGTTACATCA | 300 | |||||||||
301 | TTTCCCGCTC | TTATGTATTT | TCGAAATCAG | CAGCCTGCAA | TTTTCGAAGG | TGACCTTAAA | 360 | |||||||||
361 | GATGAAGAGA | AAGTTCTCGC | CTGGTTAACA | GATTTAGATT | CCATGGAACT | ACCTGACCGA | 420 | |||||||||
421 | ATCGAAGAAG | TGAATGCCAA | AATCTTAGAC | AATCTTATTG | AAGACAGTGA | TTATTTAGCA | 480 | |||||||||
481 | GTGCTTCTCT | ACAAAGACGA | CAATGAAGAT | TCTGAAAAAA | TTCTTCAGGA | GCTCGAGAAC | 540 | |||||||||
541 | ATTGATGATG | AAGCAGATGG | TAAACAAATT | GGTTTCGTGA | AAATTTCAGA | TGACAGCTTA | 600 | |||||||||
601 | GCAGCGGAAT | ATGGTTTGGA | TTCTCTTCCT | GCATTGATAT | ATTACAGAAA | AAAGATTCCA | 660 | |||||||||
661 | CTTTTGTACG | ATGGTGACCT | ATTAAATGAG | GAAGAAGTAC | TTACTTGGCT | TTTCGAGTTT | 720 | |||||||||
721 | CAAGACCTTG | GTGAAGAAAG | TGATGCTATA | GAAGATATAT | CTGCAAATGC | CCTGGATGAG | 780 | |||||||||
781 | TTAATTGAAG | AGTCTCCGTT | CCTAGCAGTT | CTGTTTTATG | ATATTGAAAG | CCGAAGATCT | 840 | |||||||||
841 | CAACGTATTT | TAGAAGAGCT | TGAAAACATC | GACGATGACT | GCGATAGGCA | TAATTTACCT | 900 | |||||||||
901 | TTCGTGAAAA | TTGATGATGA | AAGAGTTGTT | GCAGAGTACG | GTATTGATAT | ACTACCAGCC | 960 | |||||||||
961 | CTCGTATATT | TTGAGAACAA | AATGCCAAAT | TTCTATCAAG | GTGATCTCAC | TAAGGAATCG | 1020 | |||||||||
1021 | GAAGTGTTAG | AGTGGCTCAT | AAAACAGACA | ACTTCAGATG | AAATAGAAGA | TGTTACTGAT | 1080 | |||||||||
1081 | AAAGTACTTC | AGCACATGAT | CAAGAAAACA | CATGAATTAG | CAGTCTTATT | CTATGATAAT | 1140 | |||||||||
1141 | GACGATGAAG | AAAGCAAAGA | AATATTGGCC | GAATTAGAGC | AAATCGATGA | ACATGCAGAT | 1200 | |||||||||
1201 | AAAATTGGTG | TTCCACTTGT | TAAGATAAAT | GACCGCAATA | TGTCTGAAGC | TTATGGCATT | 1260 | |||||||||
1261 | ACTAACTTGC | CTACTCTCAT | ATTCTTCGAA | AATCAAGTAC | CTAATTTTTA | CAAAGGAAAT | 1320 | |||||||||
1321 | CTTACAACGG | AGGAAGCTGT | TCTTGAGTGG | TTGAAAGAGT | TGAAAGAATC | CTCTGAAATT | 1380 | |||||||||
1381 | GAAGTTGTAT | CGGACAATGT | TGTTGAACTT | ATGATCGATA | AATGCGACTA | TTTAGCTGTG | 1440 | |||||||||
1441 | TTGTTCTATA | ACACAGAAGA | TGCTGCTGCT | CAGAAAGCCC | TCAATGAATT | AGAAAACATC | 1500 | |||||||||
1501 | GATGATGAAT | GTGACAAAAA | CTCAATACCT | TTAGTCAGAA | GTGAAAGTAA | AGCCATTGCA | 1560 | |||||||||
1561 | GAAGCTTATG | GAATTTCCTT | GCCCGCATTA | GTTTATTTTG | AGGGCGGGGT | TCCAAATATA | 1620 | |||||||||
1621 | TACCCCGGGG | ATTTGTCAAA | CGAAGAGGAA | GTTTTGAAAT | ACCTTCTCGA | AAAACAGAGC | 1680 | |||||||||
1681 | TCTGATGAAA | TAGAAGATGT | ATCGCCTAAA | GTTTTAGAGC | AGATGATTGA | GAAAACTGAA | 1740 | |||||||||
1741 | CATTTGGCTG | TACTCTTCTA | CTCTAAGAGT | GACAGAAAAT | CCCAGGAGGC | TCTAAGAGAG | 1800 | |||||||||
1801 | TTGGAGAACA | TCGATCAAGA | AGCAGCAGAG | GAAGATATGC | CATTTGTCCG | CATTGATGAT | 1860 | |||||||||
1861 | AAAGAATTAG | CAGCAGAATA | CGGCTTCGAA | TCTGATTTGC | CTGTTCTAGT | TTATTTTGAA | 1920 | |||||||||
1921 | AAACGCATTC | CATCTGTTTA | TCATGGGGAT | CTTACAAATG | AGCAACAAGT | ATGGAAATGG | 1980 | |||||||||
1981 | CTTCATTTGC | AGTTAACCTC | AGATGGTATT | GAAGAAGTGA | CGGAAAAGAT | TCTTTTCAAT | 2040 | |||||||||
2041 | TTAGTTTCTC | ACAATCCTTT | TGTTGCTGTC | TTATTTTATG | ATCACAAATC | AAAGAAAAGT | 2100 | |||||||||
2101 | GCTAAGGTAC | TGAAGGAAAT | TGAAACGATT | GACGACGAAG | CTGATCAGTA | CGACATATTG | 2160 | |||||||||
2161 | ATAGTGAAAA | ATGACAATTT | CTTAGCTGCT | CAAAAATACG | GTTTGAGAAA | ACTTCCTGCT | 2220 | |||||||||
2221 | TTAATGTTTT | TCAAGGAAGG | AAGCCCTGTT | GTATTTGAAG | GTAATTTAAT | GAAAGAAGAA | 2280 | |||||||||
2281 | GAAGTTTTAG | AATTTCTAAT | TGGACAGCTT | GCGAATGATG | AAATTGAAGA | CATTAATGAA | 2340 | |||||||||
2341 | AACACTCTTG | ATAAACTTAT | CGGAAATAAT | GAATGCGTCG | TTGTCTTTTT | CTATGATAAA | 2400 | |||||||||
2401 | GATGCAGCGG | TCAGCGAAAA | GATTTTGCAG | AAGTTAGAAA | ACATAGATGA | CGATACGGAT | 2460 | |||||||||
2461 | CGTGTTAATA | TTCCTTTTGT | CAGAATTGAT | GACGATTCAG | TTGCTAAAGA | ATATGGTATT | 2520 | |||||||||
2521 | CTGGATGAAT | TGCCAATTCT | AGTTTACTTT | GAGAATAAAA | TTCCAAGTGT | CTATGAAGGA | 2580 | |||||||||
2581 | GATTTAATGA | AGGAGGATGC | AGTTTTGGCC | TGGATCATTA | AAAACAAAGA | AGAAGATACC | 2640 | |||||||||
2641 | ATTGAAGAAG | TTACAGATGA | AATTTTGGAA | AACATGTTGA | AAGAATATGA | ATATGTTCTT | 2700 | |||||||||
2701 | GTGTTCTTCG | CTCCTAATGA | CTGCAAAGAA | TGTGAGAAAA | TCTTACATGC | ATTAGAAAAT | 2760 | |||||||||
2761 | ATTGATGACG | ATACGGATGA | ACACGGAATC | ATGTTCGTCA | CTACAGATGA | CATGACTGTT | 2820 | |||||||||
2821 | GCTAAGAAAC | AGGCAAAAAT | AAACAAATTC | CCAGCTGTTG | TGCTATTTAG | GAACAGTGTT | 2880 | |||||||||
2881 | CCAATCGTTT | ACAAAGGTGA | TTTAAGTGAT | GACGAAGCAC | TGCTGAAGTG | GGTAACAAGT | 2940 | |||||||||
2941 | GAAGAAGCTT | TGGATATTCC | AGACAAGATC | GAGGAAGTCA | ACAACAGAAT | GCTGGACAAA | 3000 | |||||||||
3001 | CTTTTGAGTA | CTTCACCCTA | TGTCGCAGTT | TTATTCTATC | AGGAAGGAAA | TCCTCAGTGT | 3060 | |||||||||
3061 | GAAAAAGTTT | TAGTAGAGCT | TGAGAACATT | GATGATGATG | CAGAACAATA | CGATATCGAT | 3120 | |||||||||
3121 | TTTGTGAAAA | TTTCGGATCC | TGAAACAACA | GAGGAATATA | GCATTGTTTC | ATTCCCAACT | 3180 | |||||||||
3181 | TTGGTCTTCT | TTAGGAAGAG | GTTCCCACAG | TTTTACGATG | GAGAACTGAT | GGATGAGGAG | 3240 | |||||||||
3241 | AAGGTCTTAA | AATGGCTAGT | AGAAAGTAAG | CAGAAGAAGG | ATGATACTAT | TGAATTTGTC | 3300 | |||||||||
3301 | GATAGGAAGA | TGTTGGAAGT | TCTATTGGAT | GATGTCGAAC | ACATAGTCGT | CTATTTCTAT | 3360 | |||||||||
3361 | GAAAAAGATT | GTGCAGAATG | TGAAGTTATC | ATCCAAGAAC | TCGAAAAAAT | TGACGATATG | 3420 | |||||||||
3421 | ACTGATAAAC | ATGGAATTCA | CTTTGTTAAG | ACAGATGACG | TTAGAGTTGC | CGAAGATCTT | 3480 | |||||||||
3481 | GGCGTTTCAG | AATTCCCCAC | TCTAGTATAT | TTTGAACACG | GAATTCCCAG | CATATATTCA | 3540 | |||||||||
3541 | GGAGATCTTA | TGAACAGTAA | TGCAGTTTTA | GAATCAGTTA | TGAAGCAGAA | AAATGAAGAC | 3600 | |||||||||
3601 | ACTATTGAAA | ACATCAACAG | AGAGATGCTC | TACAAATTAG | TTGAAGATAG | AGAATTTCTG | 3660 | |||||||||
3661 | GCTGTGTTTT | TCTATCTTGA | AAGTGATAAA | GAAAGTGAAG | ATGTTGCACA | TCACCTGGAA | 3720 | |||||||||
3721 | AAGATTGATG | ATGACACTAG | CCTTTATGAT | GTTCACCTAG | TAAAAATGTC | AGATAAACTT | 3780 | |||||||||
3781 | ATTGCCAAAA | AGCATGGCAT | TAAAAATCCA | CCTGGTCTTG | TATATTTCAG | AAGCGGAAAG | 3840 | |||||||||
3841 | CCATTAAAAT | ACAATGGAAA | GCTGAAGGAT | GAAGAGGAAG | TTTTAGAATG | GCTCATTGAT | 3900 | |||||||||
3901 | CCAGCAACCA | TGACAGTCAG | TGACGTAATA | GAAAAAATAA | ATGACAAGAT | GTTTGAAAAA | 3960 | |||||||||
3961 | GTTTTGAGAA | AGTTTGAATA | CGTTGCAGTA | TTTTTCTATT | CCAAAGCTGG | TTGCAAAACT | 4020 | |||||||||
4021 | TGCGGTAAAG | TTTTGGAAGA | ATTAGAAAAG | ATTGATGATG | AAGCTCAGTT | AGAAGGAATT | 4080 | |||||||||
4081 | CATATTGTGA | AAATTGATGA | TAACGTTTTT | GCCAAAAAAT | ATGGCGTTTT | TGCTTTCCCT | 4140 | |||||||||
4141 | GCTATCATGT | TCTTCCGCGG | ACCTGAATCG | GAACCTATAA | TCTACGCTGG | TGATATGAAG | 4200 | |||||||||
4201 | AGCGGCGAGA | GAATGCTTAA | TTGGTTGCTC | ACTCAAAAGG | ATCCAAGTGC | TGATGTAATT | 4260 | |||||||||
4261 | GAAGAAGTTG | AAGGCCAGGA | ATTATTAGAG | TTGATTGAAT | TTGTCGAGCA | CTTAGTTGTC | 4320 | |||||||||
4321 | TTCTATTATG | AGAAAAACTT | GTGTTCCAAC | TGTGATAACG | AGAACATTGA | CGCAATGGAA | 4380 | |||||||||
4381 | TGTGAAGATT | GCCAAATCAT | CATGGATGAA | TTAGAGAGCA | TTGATGATGA | TGCCCACCGC | 4440 | |||||||||
4441 | AACGCAATTC | AGTTTGTAAA | AACTACTGAT | CTTGATGTTG | CAAAACGTTT | TGGAATTAAA | 4500 | |||||||||
4501 | ATTACTCCTG | CCTTAGTTTA | CTATGAAAAT | CAAGTTCCAA | GTATATTTGA | AGGTGATCTC | 4560 | |||||||||
4561 | GCTGACGACG | ATGAAGTTTT | ACAATGGATT | CTGAAACAAA | AATCAGATGA | TACCATTGAG | 4620 | |||||||||
4621 | ACTGTAAACA | GAGCTATGCT | AGAAAAATTA | ATTGAAGAAA | CCGAATATTT | AGCTGTCTTG | 4680 | |||||||||
4681 | ATCTACAAAC | CTCATTGTCG | AGCTTGTGAA | GTAGCTCTCC | AGGAACTTGA | AAACATTGAC | 4740 | |||||||||
4741 | GACGATACTG | ATGAATTTGG | CATTAGTGTA | GTTCGCATAT | ACGATTCTCA | GGTTTCTAAG | 4800 | |||||||||
4801 | AGATATGGTA | TTAAAACCTT | TCCCGCACTT | GTCTATTTCA | GAAATGGCAA | TCCACTCATT | 4860 | |||||||||
4861 | TACGACGGTG | ATCTGAAAAA | TGAGGAAGCT | GTTCTTGAAT | GGCTAATTGA | TGATGACAAC | 4920 | |||||||||
4921 | CGGGAATTGC | CAGATGAAAT | TGAAGCTGTC | AATTTTAAGA | TGCTTAATAA | GCTTGTGGAA | 4980 | |||||||||
4981 | GAGTCTCCAT | TCATAGCCGT | CTATTTCTAT | GAACAAGATA | ACTATGAATG | TGAGAGAGTG | 5040 | |||||||||
5041 | TTAATGGAGT | TGGAGAATAT | TGATGATGAA | TGCAATAATT | TTGGCATTGA | CCTCGTCAAA | 5100 | |||||||||
5101 | ATTTCTGATC | CCGACGCTTT | TAAAGAGTAC | AATGTAGATG | ATGTTCCAGC | AGTGGCACTT | 5160 | |||||||||
5161 | TTCAGGAGAC | AAACACCCAT | GTTGTATGAT | GGTGATATTT | ACGATGAGGA | AGCTCTTTTG | 5220 | |||||||||
5221 | AAGTGGTTGA | CCAGCAATGA | TGTTTTTGAA | ATCAAAGATG | AAATTGAAGA | AGTCAATAGG | 5280 | |||||||||
5281 | AAAATGCTAG | AAAAACTGCT | TGATGAAAAT | GAATTCGCTG | CTGTATTCTT | TTATGAGAAT | 5340 | |||||||||
5341 | AATTGTGAAA | AATGTGATGA | AGCATTGGCA | GAACTGGAAC | ACATAGATGA | TGAAGCAGAT | 5400 | |||||||||
5401 | GACCTCGATA | TCATGTTCCT | CAAAATTAAG | GATCCCCGTT | ACGCCAAGAA | ATTCGGCATA | 5460 | |||||||||
5461 | ACGCAGCTTC | CATCGCTTGT | TTACTTCAGG | AAAAAATTCC | CCTCAATCTA | CAGAGGTAAT | 5520 | |||||||||
5521 | TTGCTTGAGG | AAGAAGAAGT | TTTGGAGTAC | TTACGAAAAA | ATCGTTACCG | TCACCCCGAG | 5580 | |||||||||
5581 | TTGAATATCT | TTATATACGG | ATTAGTTGGC | CTCAGTTTGA | GCTTTGTTCT | ATACACGGCA | 5640 | |||||||||
5641 | ATTCTAATAT | ATTGTCGAAA | CAAGGCAAAA | ACAGAA | 5676 |
Single Nucleotide Polymorphisms | ||||
300 | A= 0.60 | G= 0.40 | ||
811 | C= 0.60 | T= 0.40 | ||
1323 | T= 0.69 | C= 0.31 | ||
1416 | C= 0.71 | T= 0.29 | ||
1419 | T= 0.72 | C= 0.28 | ||
1593 | T= 0.60 | C= 0.40 | ||
1806 | G= 0.73 | A= 0.27 | ||
2085 | C= 0.70 | T= 0.30 | ||
2217 | T= 0.59 | A= 0.41 | ||
4572 | T= 0.87 | C= 0.13 | ||
5160 | T= 0.58 | C= 0.42 |