| CSH_0120_SNPS | ||||||||||||||||
| 1 | ATGTACCTGG | GCAATCCCAT | CCCCCTCCCT | GTCAACTCCA | ACCCGTTCTT | CCTTCTGCCC | 60 | |||||||||
| 61 | AAGCAACACT | TCCATTCGAC | GGCTGACCAA | CACAGATTCT | CCGCAAAATT | AATACTTTTC | 120 | |||||||||
| 121 | GCCATGGAAT | ATAAAAGGAA | AATAGACAAC | AAAGAACTCC | CTCCAGACAC | CTTGCCTTCC | 180 | |||||||||
| 181 | AGAGGTGGCA | AACCTACGCC | CCTGTGCATG | AAGACCTACG | AACATTTCTT | CCCCGCCTAT | 240 | |||||||||
| 241 | CGGAGACCGG | GTGAACCGAA | AGATGAGCTC | GTATTGTCAA | CTAAGCAAAG | CAAAGACGAT | 300 | |||||||||
| 301 | TCTTGGAATA | TTACTGTAGC | CTGCAAGAAC | CAGTTCTTCT | CAGTCCAAGT | GAAACCGCCG | 360 | |||||||||
| 361 | AACACCGAAG | AATGCTTCAG | CGAAGAAACC | TTGACGGAGC | AGCTGAAACT | CGTGACGCAG | 420 | |||||||||
| 421 | ATGGCTAAAG | ACAAAGAAAG | CTCGCAACCA | CCCGTGGGAA | TACTTACCAC | AGAAGACCGG | 480 | |||||||||
| 481 | AAGACGTGGT | CTAGACTCAG | AAACACCATG | CTCAAAAAAA | GCTCCAACTC | GCTGAGCTTC | 540 | |||||||||
| 541 | GAGGTCATCG | AAAACAGCCT | GTTGATCCTC | TGCCTGGACG | ACGGCACCCC | CAACGTGCCT | 600 | |||||||||
| 601 | TGCTACTCGA | CAATCCGTAA | AGAAGCCACC | ACCCTGGAGT | GTGCCACCAT | GGCGGCACAT | 660 | |||||||||
| 661 | CTCCTCCACG | GTGGTGGCAC | AGACGCTGGT | TCTGCCAACA | GATGGTACGA | TAAATTTCTG | 720 | |||||||||
| 721 | CAGGCGATCG | TAACGAAAGA | TGGAGTTGTA | GGCTTCGTAG | TGGAACATTC | GGCATCCGAA | 780 | |||||||||
| 781 | GGAATCACAG | TTCTTAGATT | TTGCGAAGAA | TTCCTGCAAA | AACTGTCTTC | AGAAACATCC | 840 | |||||||||
| 841 | GACACTCCCT | CCAAAGCTGC | TGCTCTGAAA | ACAATCAGTC | CAACACCTCC | AGTTGTGCTG | 900 | |||||||||
| 901 | AACTGGGAAA | TAGATGACGA | AATCTCCGTT | GCCATACAAG | AAGCAACCAA | GAAGATGAAC | 960 | |||||||||
| 961 | AAGTTGTGTA | AAGACTTGGA | TCTGTTCGTG | CATCGATTCA | CAAAGTACGG | CAAAGAGTTC | 1020 | |||||||||
| 1021 | ATCAAAAGCT | ACAAGATCAG | TCCAGATGCT | TTCATCCAGG | TGTCGCTACA | ACTAACGTAC | 1080 | |||||||||
| 1081 | TACAAGGTGC | ATCGCAAGCT | GGTATCAACG | TACGAAAGTG | CCTCCCTCAG | ACGCTTCCGA | 1140 | |||||||||
| 1141 | AACGGTCGAG | TGGACAACAT | CCGAGCCTCA | ACGGCAGAAG | CCCTGGCATG | GGTGAAGGCG | 1200 | |||||||||
| 1201 | ATGTGCGACG | AACAACAAGT | TTCTGAAGAA | ACCAAAGTGC | AATTGTTTCA | AGCATGCATC | 1260 | |||||||||
| 1261 | AAGAAGCACA | CTGAAATTAT | GAAATACACT | GTAAATGGTG | AAGGTCCAGA | TAACCACCTT | 1320 | |||||||||
| 1321 | CTGGCGCTGA | AGGAAATTGC | GAAATCGAAG | GGATTCCCAG | AACACCAGCT | TTTCCGAGAC | 1380 | |||||||||
| 1381 | AAGTCCTACG | GAGAATATTT | GAACTTCAGA | CTATCAACTA | GCCAGCTCCC | AACCACCTAT | 1440 | |||||||||
| 1441 | GGAGTTCTCG | TCGGATACGG | TCCCGTCGTG | CCGGACGGAT | ACGGTTGCTC | GTACAATCCG | 1500 | |||||||||
| 1501 | TGCGCTGACC | ACATCGACTT | CTGCGTCTCG | TCCTTCTTCA | GCTCCGAGGA | GACGAGTTCG | 1560 | |||||||||
| 1561 | GACTTCTTCG | CACACAGCCT | GGAGGGAAGC | CTCCTGCACA | TGGGGGAGAT | C | 1611 | |||||||||
| Single Nucleotide Polymorphisms | ||||
| 26 | T= 0.67 | G= 0.33 | ||
| 124 | A= 0.69 | C= 0.31 | ||
| 262 | G= 0.75 | A= 0.25 | ||
| 273 | A= 0.80 | G= 0.20 | ||
| 306 | G= 0.83 | T= 0.17 | ||
| 358 | C= 0.89 | G= 0.11 | ||
| 359 | C= 0.89 | T= 0.11 | ||
| 360 | G= 0.89 | C= 0.11 | ||
| 361 | A= 0.89 | T= 0.11 | ||
| 709 | G= 0.80 | C= 0.20 | ||
| 710 | A= 0.80 | G= 0.20 | ||
| 711 | T= 0.80 | G= 0.20 | ||
| 712 | A= 0.80 | G= 0.20 | ||
| 714 | A= 0.80 | C= 0.20 | ||
| 726 | G= 0.75 | C= 0.25 | ||
| 780 | A= 0.75 | G= 0.25 | ||
| 951 | G= 0.86 | A= 0.14 | ||
| 1131 | A= 0.88 | G= 0.13 | ||
| 1331 | A= 0.89 | G= 0.11 | ||
| 1342 | A= 0.89 | T= 0.11 | ||
| 1356 | C= 0.88 | T= 0.13 | ||
| 1412 | T= 0.88 | G= 0.13 | ||
| 1420 | A= 0.86 | C= 0.14 | ||
| 1425 | G= 0.83 | A= 0.17 | ||
| 1429 | C= 0.83 | A= 0.17 | ||
| 1525 | G= 0.75 | T= 0.25 | ||