CSH_0122_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGTTAGAAG | TGCGGCCGGA | ACGAGTGGCC | GGACGCTGCA | GACCGGACCG | GATTCTATTC | 60 | |||||||||
61 | TGGATAATTT | GTATATTATG | TATTATAGAA | ATAGTGAAAG | CACAAAGCAG | GAACAATGCA | 120 | |||||||||
121 | TCTTATAGTA | ACGTCGTCTG | TGCAGGCTGT | ACAGGTGACA | CCTGTAAATG | TGTCGGAGAA | 180 | |||||||||
181 | AGGGGTCCAA | GGGGTGCTCC | TGGGAGGCCA | GGTGAACAAG | GAGTGGATGG | CCCACTAGGA | 240 | |||||||||
241 | TTTCCTGGCC | CGGACGGTTT | ACTGGGCGAA | AAAGGTGAAA | AGGGAGATTT | AGGAATTCCA | 300 | |||||||||
301 | GGACCGAGAG | GATCAAAAGG | AGACAGAGGA | AAAATGGGAA | TGCCTGGATT | TCCTGGTATA | 360 | |||||||||
361 | AATGGAATAC | CCGGTCATGC | TGGACAACAA | GGTTCTAGAG | GAGATCCCGG | ACTTGACGGT | 420 | |||||||||
421 | TGCAAAGGAG | AGGACGGTTC | TCCCGGCCGA | CCTGGAAGAG | ACGGAGGTCC | TGGTCCCGAT | 480 | |||||||||
481 | GGCTATCCAG | GGACTCCAGG | ATCCAAAGGA | GATAAAGGAG | AACCTTCATA | CGGACAAGCT | 540 | |||||||||
541 | GGGTCAAAAG | GTCAAAAGGG | AGAACCAGGA | AGAGATGGAA | GACCAGGATA | TCCCGGAGTA | 600 | |||||||||
601 | TCAGGTTTAG | ATGGCTTGCC | CGGACCTAAA | GGAGACGCCG | GACCACAAGG | AATACCCGGA | 660 | |||||||||
661 | TCGACAGGAG | AAAAAGGCTA | CGTAGGTCCA | AAAGGAAATA | TGGGTGTTGG | ATTTCAAGGC | 720 | |||||||||
721 | TCTAAAGGAG | AAGTTGGACC | CAAAGGTTAT | AGAGGTGCTC | CAGGTCGACC | AGGGCCTTGT | 780 | |||||||||
781 | AGAGAGGAAG | TAAGGGGAAA | GGAAGGCTCT | ACGATTGGCC | CACCTGGTGA | TCCTGGAATG | 840 | |||||||||
841 | AAAGGTCAAA | AGGGAGAACC | AGGAGAACGT | GGAGACAGAG | GTTTTGATGG | AATACCAGGA | 900 | |||||||||
901 | ATTGCGGGGC | CACCAGGTGA | TGTTGGTGAA | ATAGGGGAAA | AAGGTATCCT | CGGTCTTCCA | 960 | |||||||||
961 | GGAGCTAGGG | GCAAAGACGG | ACCTCCGGGA | CATATAGGAG | AGCCGGGATA | TAAGGGTGAT | 1020 | |||||||||
1021 | ACAGGAGCCG | AAGGTTTACC | TGGCATAGAC | GGAATACCTG | GAATGAAGGG | TGAAGCAGGA | 1080 | |||||||||
1081 | AGATCAGGAG | CTCCTGGACC | AAGAGGGTTC | CCCGGGCCAC | AGGGATCGCC | AGGAGGTATT | 1140 | |||||||||
1141 | GAAGGAAGAG | CCGGATCACC | AGGTTTACCA | GGTGAAAGAG | GTTTGACTGG | CCCACCAGGC | 1200 | |||||||||
1201 | TTTCCAGGCA | CGGATGGCGC | AACAGGAGCA | ATTGGTCCAA | GAGGTTTCCC | TGGCCCAATT | 1260 | |||||||||
1261 | GGCGAACCAG | GTTTAGGAGG | TCTTCCTGGA | CGAGAAGGAC | CACCAGGACC | AAAAGGCGAT | 1320 | |||||||||
1321 | AAAGGAGTTT | CAGGAGTACC | TGGAACTCCT | GGAATTGACG | GAACTTCTGG | TTTACCCGGT | 1380 | |||||||||
1381 | ATTCCTGGAA | GTAAAGGTGA | ACCCGGACCG | AAAGGAACAC | CAGGATATCC | TCTTCCTGGA | 1440 | |||||||||
1441 | CCAGATGGAC | TTGACGGTAG | TCCTGGATTG | GATGGTTTCC | CTGGGCAAAA | GGGTGAAAGA | 1500 | |||||||||
1501 | GGTCTTAAAG | GAGACAGAGG | TGTTCCTGGA | GATACAAAAG | AAGGCATTCC | TGGAAGCCCA | 1560 | |||||||||
1561 | GGTATACCAG | GTATACCTGG | AGATAAAGGA | TTTCCTGGAA | ACCCAGGATT | TCCTGGCCTA | 1620 | |||||||||
1621 | CCGGGATCTA | GAGGTTCTAA | AGGTGATTCT | GGGGGCAGTT | GTGCTCAGTG | TCAAGCAGGT | 1680 | |||||||||
1681 | GAAAAGGGTG | AAAAAGGTGA | GAGAGGATCT | GATGGAGCTC | CAGGTCTACA | AGGAGAACGT | 1740 | |||||||||
1741 | GGAACAAGGG | GTATACCAGG | GCGCCTAGGT | GACAAAGGAG | AGGATGGATT | GCCGGGTCTA | 1800 | |||||||||
1801 | TCTGGTATAC | CAGGCATTGA | AGGTATCCCT | GGAATTCCAG | GAAAGCCAGG | TACAAAAGGT | 1860 | |||||||||
1861 | GAAAAAGGTC | TTCCAGCTTA | CGTGCGAGAA | GAACTTGTTA | TTGGACCACC | AGGTGAGAAA | 1920 | |||||||||
1921 | GGCGAGAGAG | GTGGTTCAGG | GCTTCCAGGA | CTTCCAGGAA | AAGACGGATT | GAAAGGTGCT | 1980 | |||||||||
1981 | GATGGATATC | CTGGCCCACA | TGGAACTCCA | GGACTCAAAG | GAGAAAAAGG | CAACATTGGT | 2040 | |||||||||
2041 | CTTCCCGGAG | CTCCCGGGCT | ACCAGGACCT | TTCGGTCCTC | CTGGATCACA | TGGTCCTAAA | 2100 | |||||||||
2101 | GGCGAAAGAG | GATACGGACA | GCCTGGACTT | CCCGGCGAAA | GAGGAGAAGA | AGGAAAGGCA | 2160 | |||||||||
2161 | GGAGAACCCG | GAAGATTCGG | ACCCCAAGGA | CAAAAAGGAG | AACCAGCTCC | CGTGCCTCCT | 2220 | |||||||||
2221 | CCAAATGTTC | TCGAGTTAAT | ACCAGGACCA | CCAGGACCGC | CAGGAGAACA | AGGAGATCCC | 2280 | |||||||||
2281 | GGACAATCAG | GACAATTAGG | CTCCCCTGGA | ATTCCAGGGA | GACCAGGATT | ACCTGGTTTA | 2340 | |||||||||
2341 | CCCGGTATCA | AAGGAAACCC | AGGATTTGAT | GGCTTACCAG | GACCATTAGG | ATCTAGAGGT | 2400 | |||||||||
2401 | TTGCCCGGCC | CTAGAGGAGA | CAAAGGAGAC | CCAGGACCAC | CAGGATTTGT | GGGAGAACCA | 2460 | |||||||||
2461 | GGACGTGTAG | GGGCACCAGG | AGTTCCAGGT | TTCCCAGGAC | CGAAAGGTGA | CCCAGGAGAA | 2520 | |||||||||
2521 | AGAGGCCTTC | CAGGAATTGG | TTTAAGAGGA | CCTCAGGGTC | TTCCTGGTTT | TGCTGGAGCA | 2580 | |||||||||
2581 | AAAGGAGAGA | GAGGTCTGCC | AGGTCTTCAA | GGAGCTTCGG | GTGACAAGGG | ATTTCCTGGA | 2640 | |||||||||
2641 | TACCCGGGTG | ACAAAGGAGA | CCGAGGTATT | GCTGGACTTT | CGGGCTTTCC | CGGAGTGAAA | 2700 | |||||||||
2701 | GGAGACAAAG | GAGAAGGCGC | TTTGATAGGT | TTGCCAGGAC | CTCGAGGAAC | ACCTGGGTTG | 2760 | |||||||||
2761 | CCAGGATTAG | CAGGCGTAAA | AGGTGCAAAT | GGTGAACCGG | GAGAACCAGG | TCTAACAGGA | 2820 | |||||||||
2821 | CCTTTCGGTC | TCCCAGGTGC | AAAAGGTACG | CCTGGCATCC | CTGGAACACC | AGGACGTGGA | 2880 | |||||||||
2881 | GGATTTGATG | GACCACCCGG | ATTACCAGGA | AGACCAGGGA | AAGATGGATT | GGATGGCTTG | 2940 | |||||||||
2941 | CCAGGATTCC | CAGGAGAGAA | AGGGGAGAGA | GGTTTTGGTG | GTCCTCCAGG | ACAGCCAGGA | 3000 | |||||||||
3001 | TCAGTTGGAC | TGGATGGCAT | ACCAGGTCTT | CAAGGATTAA | AGGGAGATAA | GGGATTCCAA | 3060 | |||||||||
3061 | GGATTTCCCG | GACAGGATGG | CAGAGAAGGT | GTACCTGGTC | AAAAAGGAGA | ACCTGGAGTA | 3120 | |||||||||
3121 | GCCGGATTCC | CCGGTCTTAA | AGGAGAACCA | GGAGGAATAT | CAGCAAAAGG | AGAAAAAGGA | 3180 | |||||||||
3181 | TCACCTGGTA | TACCTGGTCT | CAGAGGACCG | TCTGGGACAC | CTGGATCACC | AGGATTTGAT | 3240 | |||||||||
3241 | GGTCTACCCG | GAATTAAGGG | AGACGACGGG | ATACCTGGAG | TGGGTCTACC | AGGCCCACCT | 3300 | |||||||||
3301 | GGACTTCCTG | GAGAGAGAGG | ACCCGAAGGC | CAACCAGGGC | TACCAGGAAT | TCCAGGAGAG | 3360 | |||||||||
3361 | AAAGGATCAG | AAGGATTGCC | GGGATTCCCA | GGATTGAAAG | GAAATCCTGG | TTTTGAAGGC | 3420 | |||||||||
3421 | TTACCAGGTC | CTCCAGGTTC | TCCAGGATTC | GAAGGGCCTG | TCGGATTACC | GGGTGTGAAG | 3480 | |||||||||
3481 | GGGGAACCAG | GTTTATCAGG | ATATCCAGGG | GAAAAGGGTA | ATTCAGGAAG | TCCAGGCTTA | 3540 | |||||||||
3541 | CCTGGGATTC | CAGGATTTAA | AGGAGAAAGA | GGATCACCAG | GATTTGTTGG | TCCACCAGGA | 3600 | |||||||||
3601 | TTAGATGGAG | CACCTGGTGA | CATAGGAAAT | ACCGGTTTTC | CAGGTTTACC | AGGAGATCGA | 3660 | |||||||||
3661 | GGTTTTCCCG | GCGATAAAGG | CGATCCTGGT | TTGCCCGGAC | TGAGAGGATT | TCCTGGAGTG | 3720 | |||||||||
3721 | AAAGGGGAAC | GCGGTTTTGA | TGGAATTCCT | GGAAGAGCAG | GAGCAAAGGG | TGAACCAGGT | 3780 | |||||||||
3781 | TTTCCTGGAC | CGAATGGATT | ACCAGGACCA | TTAGGATTGC | CAGGATTCCA | AGGGGAACCG | 3840 | |||||||||
3841 | GGTTTGCCAG | GAGCACCTGG | AGTTCCAGGA | GTTCCAGGTT | TTGGAACTAA | AGGCGAACCA | 3900 | |||||||||
3901 | GGACTACCAG | GATTGCCAGG | AAAAGACGGA | TTACCTGGTC | AACCAGGTCA | AAAAGGCACT | 3960 | |||||||||
3961 | CCAGGAATAC | CAGGTTTAGC | AGGAGAACAA | GGTTTTCCAG | GAAAACAGGG | ATTACCAGGT | 4020 | |||||||||
4021 | CTACTAGGTG | AGAGAGGAAA | CGATGGTTTC | CCTGGTTTAC | CAGGGTCAAG | AGGATTAGAT | 4080 | |||||||||
4081 | GGATTACAAG | GATTAAGGGG | AGACAGAGGA | TTACCTGGAT | TCCCAGGAAT | CAAGGGTGAA | 4140 | |||||||||
4141 | CAAGGTTATC | CAGGAAAAAC | AGGACCACCA | GGACTTCTCG | GACCGCCAGG | TCTTCCAGGT | 4200 | |||||||||
4201 | ATTAACGGTG | CTGAAGGATT | ACCAGGCTTT | AAAGGTGAAA | GAGGAGAGCC | TGGCCTCCCA | 4260 | |||||||||
4261 | GGTACTCCAG | GTCTTTCAGG | CGATAAAGGT | GATGACGGGT | TGCCCGGAAT | AAATGGTCCT | 4320 | |||||||||
4321 | ATAGGTCCCA | GAGGTGTTGA | AGGTTTGGAT | GGAGAAAAGG | GAGATCCAGC | GATCGTACCT | 4380 | |||||||||
4381 | CCAGAGCAGT | GGATTCGAGG | CGAAATAGGT | GACAGGGGAT | TACCAGGATT | ACGTGGTTTA | 4440 | |||||||||
4441 | CCAGGATTGA | GGGGACCAAA | AGGCAACGCT | GGAGGACCGG | GTGTTCCAGG | GCTAAAAGGC | 4500 | |||||||||
4501 | AATCCAGGAC | TAGAAGGATT | ACCAGGAACA | GTTGGGCCTC | CAGGCCCTCA | AGGTCCAAAA | 4560 | |||||||||
4561 | GGAGACAGGG | GATTCAATGG | CCTTCCAGGA | TCACCGGGCC | TACCAGGACT | AAGAGGAGAG | 4620 | |||||||||
4621 | CCAGGTGTGC | CAGGCGTTCC | AGGAAGATCT | GGTGGAGAAA | AATCCATGGG | AATGCTTGTA | 4680 | |||||||||
4681 | GTTCGACACA | GTCAATCATA | TAATATTCCA | CAATGTCCTA | GAGGAATGCC | CAAACTATGG | 4740 | |||||||||
4741 | GATGGATACA | GTTTACTCTA | CATAGAGGGT | AATGAGAAGT | CTCACAATCA | AGATCTGGGC | 4800 | |||||||||
4801 | TTTGCCGGAT | CGTGTATAAA | GCGATTTAGT | ACAATGCCGT | TCTTGTTCTG | CGACTTCAAC | 4860 | |||||||||
4861 | AGTGTCTGCA | ATTATGCCAA | CCGCGATGAC | AAGTCCTACT | GGTTGTCCAC | AAACGCTCCG | 4920 | |||||||||
4921 | CTTCCTATGA | TGCCGGTCGA | TCAAGATATG | ATTCAAGAGT | ATATTAGTAG | ATGTGTAGTA | 4980 | |||||||||
4981 | TGTGAAACAC | CTGCCAATGT | CATAGCTGTT | CACAGCCAGT | CACTAGACAT | ACCAAACTGC | 5040 | |||||||||
5041 | CCCCGAGGCT | GGAACTCCTT | ATGGGTCGGC | TACAGTTTTG | CCATGCACAC | GGCGGCTGGA | 5100 | |||||||||
5101 | GCGGAAGGTG | GCGGACAATC | CTTGTCAAGT | CCTGGAAGTT | GTCTAGAAGA | TTTCCGTGCT | 5160 | |||||||||
5161 | ACTCCATTCA | TCGAATGTAA | TGGTGGTCGA | GGAACATGCC | ACTATTTTGC | CAATAAATAT | 5220 | |||||||||
5221 | AGTTTCTGGT | TAACGAGTAT | TGAAGATGAA | GAACAATTTG | AACGGCCAGT | CAGTACTACA | 5280 | |||||||||
5281 | TTAAAAGCTG | GAGACTTGCG | AACGAGAGTC | AGTCGGTGTA | ACGTCTGCAT | TAAAAGTACA | 5340 | |||||||||
5341 | ATAGTGACG | 5349 |
Single Nucleotide Polymorphisms | ||||
315 | A= 0.62 | G= 0.38 | ||
1800 | A= 0.65 | C= 0.35 | ||
1917 | G= 0.75 | A= 0.25 | ||
2598 | G= 0.72 | A= 0.26 | T= 0.02 | |
2643 | C= 0.88 | T= 0.12 | ||
3099 | T= 0.88 | A= 0.12 | ||
3537 | C= 0.85 | T= 0.15 | ||
3777 | A= 0.67 | G= 0.33 | ||
3894 | C= 0.67 | T= 0.33 | ||
3954 | A= 0.69 | G= 0.31 | ||
4159 | A= 0.64 | C= 0.36 |