CSH_0128_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGGACAGTG | GGTTGGGGGT | CAGATGGCCG | CTCAGCCCTT | ACGCCACTGC | TTTGGCAGCG | 60 | |||||||||
61 | GGCGCACTTT | TTGCGTTCTG | CCTCGCTCTG | TGGAAGCACC | GCACCGGAAC | TAGGAAAGGA | 120 | |||||||||
121 | GCTGGAAAGG | ACCCCAAGGG | TCAAAATTTC | GGCAGAGATC | TGGATCCTAA | AAAGGAGCAA | 180 | |||||||||
181 | GATGTGCCTG | AAAAGCCTGG | CAAGGAAAAG | AATGAAGCAG | AAGCAGATAG | GAATAAAAAC | 240 | |||||||||
241 | TTTCCGATTT | TAGCTGTGAG | AGACGCTCGA | AGGGTGTTTA | ATTATGAACA | ACTGTGCGCA | 300 | |||||||||
301 | TCAGGACAAT | TCGGAGCGAT | TCCAAGAACT | CCACAAAGGC | GTCAAACATT | AGAAAATCCA | 360 | |||||||||
361 | AATTTATACT | CAGCTTTTCG | GCGAAGAAAT | GCGAAAAAAG | AAAACAAGAA | TTGGCTAGAA | 420 | |||||||||
421 | TTCAACCCTG | CGTCATCTAA | TTTCCCTTGT | ATTTACCAAC | AACCTTTCTG | TTTTGGTAGC | 480 | |||||||||
481 | GAATTTCCAA | GACTGAACGC | CAAATTGCTT | TTGAATGTTT | CTCCCAACTT | GCATACGTAT | 540 | |||||||||
541 | ATAAATCAGT | TTAAAGATAT | ACCTATACCT | GGAATTTCAA | GGAGAAGTGA | TTTTGATAAT | 600 | |||||||||
601 | TTCGATGTTT | CTATAAGACC | TGAAATTTTG | AAAAATAAGC | CTATCACACG | CTCCGCAGTA | 660 | |||||||||
661 | TGTTTAGCTC | TTGAACGGCA | GTTGCATAAA | TTTTTAGAGG | AGCCTTTTAA | TGAAGTTAAA | 720 | |||||||||
721 | CTGACTGAGA | GAGCTATACA | GACAGCAGAT | ATATCAGAGG | AAAACGAAAA | TAAGGCTTCT | 780 | |||||||||
781 | GCTGATGATA | CTAATGATCG | CGATTTGAAT | TTTGATTCCG | ATAGCTGTGC | AAATGCAGTG | 840 | |||||||||
841 | TTACAGTCGG | ACAACATAGA | AAGTGATAAA | AAGATCAATG | CAGATTCATC | TCTTTGGGAT | 900 | |||||||||
901 | TCAGGATATG | GTGAAAAAGC | ATTTGATGAA | CGCTCTAACA | CTCCAAAGGA | GGACGAAAAT | 960 | |||||||||
961 | GTAGCAGAAT | GTAGTGGCGT | ATTAAATACT | GAACCCAGTA | TTCTTTCAGA | GGATTTGACA | 1020 | |||||||||
1021 | TCTCAAAAAT | TTTCCGAGTC | GTCTAACCAT | TCTGATGATT | ACTCTCATCT | AACTTCGGAT | 1080 | |||||||||
1081 | AGTAAATCAC | TAAACACTTT | TACTCCGAGT | ACATTTTCGG | AATCAGCAGA | TCACCCAGAT | 1140 | |||||||||
1141 | GAATCAAATT | TACAGACATT | TACATTAGAT | GTTGAAATTG | CAAATCTCAA | AATTCCCGAA | 1200 | |||||||||
1201 | GAAAAGATTG | AAAGTTCAGA | TTTTGAAGGG | AATGCAAATA | ATTCACAAGT | AAATAAATGT | 1260 | |||||||||
1261 | ATGGATGAAA | AACTACAAAA | CCGTAGCGAA | GAACAACTTC | AGGTGAGTTC | CAGCGAAGAA | 1320 | |||||||||
1321 | AATATTTTTA | GAGATATTGA | TGATGGTTCT | GACATTCACC | TCGACAGTGA | CCGTGAATCG | 1380 | |||||||||
1381 | GTGCTTTCTA | CTACTGCAGT | AAATTCTGCA | AAGTCGGAAA | TGCAGCAGCC | GATAGAGAAC | 1440 | |||||||||
1441 | TTGACTTTTC | GGAGTTCAGA | TTTGGAAGAG | TTCCAAAACA | CATTCCCGAT | CCACTCGGAG | 1500 | |||||||||
1501 | GAAAGGCAAG | AATCCAGAGA | TGAAGAAAAT | CTTTTTCGGG | GCCTGGAAAA | TATGTCAGTA | 1560 | |||||||||
1561 | AACGAAAAAA | ATCTGGACTC | CCCGACACGT | GCATCTGAAG | TGGACGTAGG | AGGTGATAGG | 1620 | |||||||||
1621 | GTGGATGAGT | CGATAAAGGA | ATGCCCGGAC | GCGAATTTAG | TGAATTCAGA | TTTGGAAGGA | 1680 | |||||||||
1681 | ATCCAGAGCG | CGCTCGATAG | TGCCGAGGAG | CGAAATAATA | CCGCGCTATC | GCCGGTTCTT | 1740 | |||||||||
1741 | CACGAAACAG | AGTTATCTCA | AAAGAGAAAC | TCCCGCCTGA | CGGAAACTGC | AACTCCTGTC | 1800 | |||||||||
1801 | CGTGACGTCA | CAGAAGGGGG | AACGTCACGT | GACTCCTCCG | TGTTCGATGA | GAGAGGGACT | 1860 | |||||||||
1861 | TTCAACGTGC | CGCGTCAAAT | GGACCGCGAG | ACGGGTGAGC | GGTCGGTTGC | CGTCGAGTCG | 1920 | |||||||||
1921 | ACGGTGACTA | CGGAGACCAC | GTTCAGAGCA | AACGGGGATA | CTCGGCTCTC | TACCGCGGTT | 1980 | |||||||||
1981 | GTCAGCCGCC | TGACTCTCGA | CGATTGGTCT | TCGGGGGTTT | CCGAGAGGGA | GGACTCGGTG | 2040 | |||||||||
2041 | TCAGTACGGA | CTACCGTCAG | CGAAGATGTT | TTCAGACCCA | CTTTCGAAGA | ATTCGTGCCT | 2100 | |||||||||
2101 | TTAAAGAGCA | GTGAGAAAAT | TTCGAAAAGT | GAGGCAAGCA | GGAACGAGTC | GATCGACGTT | 2160 | |||||||||
2161 | TTCGTCCCGC | TAGCATCGAG | GAACGGAAGT | GATGAGAAAA | AGTTTGAACC | GACAGAGGGC | 2220 | |||||||||
2221 | GAGTCACCCT | CATCACCTCG | TGTCGACCGC | CTGAAAGGGC | TTCTGAGCAG | AGACGAAGAA | 2280 | |||||||||
2281 | CGGCGCTCTC | GCACCAAGTT | TCATCACCTG | GCTGACAGCA | GTCACGTGGG | GGGTGCGATG | 2340 | |||||||||
2341 | GAGGGCGAGT | GGGATCGTTT | GCTGCGCGAT | GTCTTGGCGA | GTGTCTCGGA | GCTGGAGCGC | 2400 | |||||||||
2401 | TGGGAGCGCC | GGCACCGTGA | CGTCAGCAGC | GATGCGGAGG | ATGCGGAGCA | GCAGCATCAC | 2460 | |||||||||
2461 | TTCTCTCAGT | CGGACTCTTC | CTTCACGATG | GAAGAGGAAG | CGCTCAGCCC | CAAAGGTGAG | 2520 | |||||||||
2521 | ACCCCGACCA | AAGTGAAAAG | CCTGCGGTTC | AAGCTTGATC | CGGACGTGTT | TGACGTGCCC | 2580 | |||||||||
2581 | TCGGACGACA | GTTTCTACGA | CGATGACGAT | GACGAGACCC | GCCGGGTCTG | GAAAAAACAG | 2640 | |||||||||
2641 | ACCAAGTACA | GAGCATTTTC | GTCGCTTGAA | CTTAACGATG | AGCCCGTCAG | ATTGGTTTCG | 2700 | |||||||||
2701 | GTACATGCCA | GTGTGGTGCC | TGCGGGACAG | AAAATGGTCG | CAAGACCAGT | CGGTATCGAT | 2760 | |||||||||
2761 | CTGCGAGTGC | GACTTACAGA | AGAGCGGCAG | AGTAAGAGAG | CCCATGTGAG | CACCTCCCCC | 2820 | |||||||||
2821 | TCGCAAGCAA | AGAGACGATC | TCCAGTTTCT | GATAGAGGGA | TTGGATGGTG | CCAGGAACTG | 2880 | |||||||||
2881 | TCACCTGTGA | CTGAAAACGT | CGACTGGCGG | GAAACTTTTA | CACCTGTCAC | TCCCGAGTGC | 2940 | |||||||||
2941 | AAAAGTGTAC | CCAACGGAAT | ACTTAAAACG | CCATCGCCGA | AGACAGACCC | TTCCCCTATT | 3000 | |||||||||
3001 | GAATCCCCTA | ACCCTTTTAA | ACTCGAGAAT | GGAGTGACGA | CGAACGGTGT | GAGCCCAGTG | 3060 | |||||||||
3061 | GTTGAAAATA | AGAGTGCTGA | GAAAGCGAAA | TACAACGGTT | GGAAACCAGT | TGAAAGAAAA | 3120 | |||||||||
3121 | CCATTCTTGT | TACCCCGTAA | GAAATTTGAA | CCCGATCCGG | AAGCTATCGA | ACGTATAACA | 3180 | |||||||||
3181 | GGATATAAAT | CTGCTCTCTC | GAAACCTCCA | CTGCCACCTC | CTCTACCACA | CAAATTGAAT | 3240 | |||||||||
3241 | GCAAGTTTGG | CAGTAAGGAA | TAGAGCTGAA | CAGGCCAGGA | AACAGTATTT | AGATAGCAAA | 3300 | |||||||||
3301 | GCAGCGTTGG | CTGGTAGCAA | AGTTGATGGC | ACGAAAAAGT | TTCAACAGTT | TTTGAGCCAA | 3360 | |||||||||
3361 | GCCCAAAATG | ACCGTGCCAG | AATTGTGACA | AGTGTGCCAG | ATCTGGCGGC | TATCGAAAGA | 3420 | |||||||||
3421 | GCAGTTACTG | AACAGTGGAC | CAAAGAACGT | GGATCTGTGT | CTCCTCGAGA | AAGCCCTAGC | 3480 | |||||||||
3481 | CGCGAGGATA | ATAAGAAAAC | TGATGGGGTA | ACATTGTCTC | GTGGCAGTAC | ACCTGACGAT | 3540 | |||||||||
3541 | AAATGGGCTA | GCTACGTTCA | GTCATGCAGG | CAGCACTTAG | GTCGGAGAAG | TCAGAGTATG | 3600 | |||||||||
3601 | ACGTATCTAG | AAACTGACAT | TGATATCATA | CCTGTTCTAG | ACGAAGATGA | TAAATGCCAC | 3660 | |||||||||
3661 | AGTACGAGTG | CCCTCGATGA | GCCCGACGAA | GCATTACCAG | ATCCTGACGA | TTCCGATCTT | 3720 | |||||||||
3721 | GACAGGAGTC | GCGAGGATCT | AGATGATTCT | GGACGGGCAA | AATCGGAACA | TGAACTTCGT | 3780 | |||||||||
3781 | ATTGAAAGAT | CTCTTCGCAG | TCTGCCAATA | CCAGAATGGT | ATCGACGGTC | TGAGAAGACA | 3840 | |||||||||
3841 | AAGACAGGTT | TTCTGTTAGG | GTCTTCTAAT | AAAGAGAAGC | GTGGCTGGGC | TGCAGCAAAG | 3900 | |||||||||
3901 | TCTCTTGCCT | CCTCCACCTC | CAGCCTCGCA | TCTTGTGGTC | TTAGAAGACC | AGTAAGGTCA | 3960 | |||||||||
3961 | CTTAGATCTT | CCCGAGAGAA | CATTCCGTGG | TCGAGATCGT | CTGCTTCTCC | AGATGGACCA | 4020 | |||||||||
4021 | ACATTGTCAC | TGGCATTAGC | CAAAGCTTTT | AGAGAACCGT | ATCTAGGTTG | GCGGGCTCGC | 4080 | |||||||||
4081 | ACCCCAACCA | GCAGTGGTGT | GTCAAGCTCA | CCACGGGCAT | CTCCCCCTTC | GTGGGGAGCA | 4140 | |||||||||
4141 | ACGACGACGG | ACGATGAAGC | TAACGGCGTG | TCATTTGACG | GAGAAGACGC | TTTCGGCCGC | 4200 | |||||||||
4201 | ACAACATCCT | CTGAGGAAGA | TAGAAGGGAC | GAGCCTTTGT | CTCTAGATGA | TACCGGTGCT | 4260 | |||||||||
4261 | GATGCAGTTA | CAGTTTCTAT | GGATACGAAT | GACCCGGTGA | AACTTCCAGG | AGGTGAGGAT | 4320 | |||||||||
4321 | ACGTGCGATG | ACATAAATAA | TATGTCTATG | GACACATGCG | AACTGTTCGA | TGCTAGTGTT | 4380 | |||||||||
4381 | GTTGTTCCTG | TCGACGAAGA | TCCCTCCCCG | CAGGCGGATA | CTGGGGATGA | CATTGATAAC | 4440 | |||||||||
4441 | CTGTCAACGG | ACACCACGAC | CACTGAGGGT | CGGAAATTAG | ATCCCAAGCT | AAAACGCTAC | 4500 | |||||||||
4501 | TCGTACAGCC | AGAGCATCTA | TCATAGCGAG | TGGGATGAGG | ACGAGGAGTC | CCGCGGCGAC | 4560 | |||||||||
4561 | CGGAAAGGTA | AAGAAGAGGA | CAGAGAGCCA | AGTCCGTCTT | CGCCGGACCA | CAAAGTTGTC | 4620 | |||||||||
4621 | TGGATTGAGT | CATCATTTGT | TGGGTCGAGA | ACTACCACAT | CTATTGTGGT | ATTGCCTGAG | 4680 | |||||||||
4681 | AAAAAAGCCC | CAGGGAGCAC | ACAGGAAAGG | CCGGCCTCAA | GG | 4722 |
Single Nucleotide Polymorphisms | ||||
255 | T= 0.86 | C= 0.14 | ||
840 | G= 0.88 | A= 0.12 | ||
952 | G= 0.88 | T= 0.12 | ||
993 | A= 0.63 | G= 0.37 | ||
998 | G= 0.85 | A= 0.15 | ||
1012 | G= 0.58 | A= 0.42 | ||
1120 | G= 0.90 | C= 0.10 | ||
1143 | A= 0.81 | C= 0.19 | ||
1346 | G= 0.88 | A= 0.12 | ||
1393 | A= 0.70 | G= 0.30 | ||
1960 | A= 0.74 | G= 0.26 | ||
2052 | T= 0.74 | C= 0.26 | ||
2106 | G= 0.71 | A= 0.29 | ||
3357 | C= 0.83 | T= 0.17 | ||
3561 | G= 0.83 | A= 0.17 |