CSH_0145_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGCAATGTA | AGGGTGATGT | AAAAGAATTA | AATTCTGATA | TTAAATTATC | GAAAGGTGTT | 60 | |||||||||
61 | AAAAATATTT | CAATTATACA | TGATGCAAGT | ACATTTGATT | CTCAACACAG | TTTACGGACA | 120 | |||||||||
121 | GATTTATCAG | TCAAAGATAA | TTATAATTTA | TTACATTTAG | ATAATAATGA | AATGTTTTCT | 180 | |||||||||
181 | GTTAAAAACT | CTGTTAGTTC | TAGTTCTGTT | AATTTTACTG | AGCCACAGTT | ACCAAGAATG | 240 | |||||||||
241 | CACCTTGATT | CTCTCTCTGA | AGGTACCCGC | AACTTTTTGA | ATGAATTGGC | AGCATCTAAT | 300 | |||||||||
301 | TCTACTAATT | CATTTAATGA | TAATATTAGT | GGTTATGCCT | TATCTTCTAT | CAATTCGCCA | 360 | |||||||||
361 | CTGTTATCTT | TAAAATGCAA | AAAATCAGCA | GAATCCAATT | TTAATGTTGC | TCATAAAAGT | 420 | |||||||||
421 | AGTACTATAT | CAACTGATGA | TGAGAATGCA | TTGTGTAATG | AACTTAAGGA | TGGTAATAAG | 480 | |||||||||
481 | GATGTAATTA | AAACACTTTG | TACTATTAAT | AATGATAACA | GGGAGGAAAC | AAGTTCACAG | 540 | |||||||||
541 | TGTTATATTA | ATGAAGAAAA | TAAGGCTGAA | ATTAGTGCAA | TTTGTAATAC | TAGTGTTGAA | 600 | |||||||||
601 | AACAAGGATA | TTACTGATGT | ATTTTGTGAT | ATTAGTAATG | AGAACAAGGA | TGTGACTAGT | 660 | |||||||||
661 | GTGCTTCATA | ATATCAGCAA | TGAAATAAAA | AATGTGACCA | ATATACTAAG | TGATATTAAT | 720 | |||||||||
721 | GATACAGACA | ATGATGTTAC | CAAATCACTT | AGTGATATTA | ACGATGAAAA | TAAGGATGTG | 780 | |||||||||
781 | ACAAGTGCTC | TTGATTTAAT | TGAGCAATCT | TCATTACATG | ATAGGAACCT | TTCATCTGCT | 840 | |||||||||
841 | GAAATATGTA | ATAGCTTAAA | TCAAATATTT | AATGAAGCTA | CTGCAGATTT | GCCTGCAAAT | 900 | |||||||||
901 | GCAATTTCAG | TTGCTGAAAG | TAGTCAGGTT | GGTGAGACTG | ATGTAAACAC | AGAAAATAAT | 960 | |||||||||
961 | TCTATAACAT | TGTGTATGAA | CAATGAATCT | GAAATTTATT | TACAAGCTGT | TGAATCTGGC | 1020 | |||||||||
1021 | ATCAGTCTTA | CGGCAGATGA | GACAGGTACT | ATCAACCTCT | CTGATTTAAA | TTCAGGAAAT | 1080 | |||||||||
1081 | AATGCTGAAT | TTTGGCAGCG | TGTTTTGTTA | GTGCAAGATG | AAACAGGCAA | TATAGAAACT | 1140 | |||||||||
1141 | GTGTTTTTAT | TACAAGATAA | AGCTGAAGAA | GGTCTGTCTT | CAGATATAAG | TAATGGAAAT | 1200 | |||||||||
1201 | ATAATGTCAG | AAAATACTGC | AGAAAATTCT | CAAAGTAGCC | AGTGTATGAT | CATTGACAGC | 1260 | |||||||||
1261 | AGTTTAGTTG | ATGGTGTATC | AAATGAAGTC | CATAATTTAT | TAATTACTCA | AGATACTGCA | 1320 | |||||||||
1321 | AATAATGCTG | AAAGTGTCTT | AGAAACTCAA | GATGCTGATA | GTGGGCAGCA | TCTTGGACTT | 1380 | |||||||||
1381 | GAAGTAGTAG | ATTCTGCAGT | TGATGAAAAC | TTATTAACAT | CACAAAATAA | TGTGGATGTA | 1440 | |||||||||
1441 | AATCAGGACA | GTTTAAAAAT | AGGTAACATT | TCTGAAGAAG | CAAAAAATCA | GTTAACTGCA | 1500 | |||||||||
1501 | AATACGAAAG | AAAATATTTT | AAATGAACAA | GAAAGGAATG | TTAGTATAAA | GGTAAATTCA | 1560 | |||||||||
1561 | ACTGTAGAAA | CATCTCAAAT | TAGTTCAGCT | AATGATCAGA | CTTTGTCTTT | AAAACAGTCT | 1620 | |||||||||
1621 | TCAGCTAACC | TTTTAAATAA | TGAAGAAGCT | CCATCTGTTT | GTACTGAAAA | GTTAGTTGAT | 1680 | |||||||||
1681 | GTTAGCTCTC | AAAAAGAATT | TAACTATAAT | GGAAAACTAA | ACAGTTCTAG | TGAAATTTCT | 1740 | |||||||||
1741 | GTTCGTTTAA | ATGAACCTGA | ATCTAATGCT | TGTTTTAACC | AGCATTCAAA | AGCTAAAAAA | 1800 | |||||||||
1801 | AGTGTTTCTC | ATGGTTTATC | AGTCAGAAAT | AAATCAGTAG | AGGATTTAAT | TCAGTATACA | 1860 | |||||||||
1861 | CAGATATTAA | ATAATGTAAC | AGATAAATCA | AATATTTATA | AAACCACTAC | AAGCCATATA | 1920 | |||||||||
1921 | AATGGAGCTA | TTTATCATTC | TGAATCCAGT | CATATGCCAT | CAACAAATGT | CCAGAGTTGT | 1980 | |||||||||
1981 | GATCCAGAAG | GAAACCTATC | AAAATTAGAT | GAATTAGTTG | AAAGTAAACT | TAGTTACAAA | 2040 | |||||||||
2041 | CCACTTCCAA | AATCAAGAAA | ATCTTTCCAC | CTAAGTATTT | TTGGCAGATC | AGCTAGAAAA | 2100 | |||||||||
2101 | AGCTTGTTTG | GTTCAAGACT | TAGTAATTCA | TCAATAGATT | GCTGCGATAT | GGACTTATCA | 2160 | |||||||||
2161 | CAAACATGCA | ATGAAAATAA | TTCTGAATAT | GCAGAAGTGA | AAAACATGGG | GATAAAAAGG | 2220 | |||||||||
2221 | ACTGTGGACA | GTGAACACGT | CCAAGATATT | AAGCGTTTGA | AGACAGATCA | TATTGATATC | 2280 | |||||||||
2281 | AGTGATGATG | TGAATTGTAT | TTATGTGTCT | AAAAGTCGTA | CTGTAGCTCT | GAAGACTTTC | 2340 | |||||||||
2341 | AAAAAACCTT | TTACCGCTGC | AAGAAAATCT | GTGTTAGACT | CGAGAGAAAT | ATTAAAGAAT | 2400 | |||||||||
2401 | TTACGAAACA | CTGCTATGAA | AACATTTGTG | CCAAAAACAC | ATAAAGCTCA | AAGTGCATTA | 2460 | |||||||||
2461 | AAGACTTTCT | CACGGAAACA | AGCCCCTGTT | GTATGGAATG | AAACTCCGCC | TACAGATAAT | 2520 | |||||||||
2521 | ATATTGTCAA | GAAATGTTCC | TGAGAAAAAT | ACAAAACAGA | GCTATGGAAA | TCAGTCTAAT | 2580 | |||||||||
2581 | TCTCAGACGA | AGGTTTTTCA | GCCAGAAATA | TGTGAAATTA | GGATTTTGCC | AAATGATTAT | 2640 | |||||||||
2641 | GTTCAAAGAG | CTTCACAATT | ACTATTAAAT | GCTGAGAATG | TCGAACCTGC | TAGTACACCC | 2700 | |||||||||
2701 | GAAGATAATG | TTTCTGAGGA | AGAAATTAAA | CTGCCATCTG | GATGTACTTC | ACCTGTTAAA | 2760 | |||||||||
2761 | GAATTTTTGC | CTCTTAAATT | TCACTGTTAT | TGTGCTGCAA | AGGAGGTGCC | ATGTATATGT | 2820 | |||||||||
2821 | AATGATGGAA | ATCTGCAATT | AACTTGTGAG | GCAGAGGATT | CTATTGATGG | AAATCCTGTC | 2880 | |||||||||
2881 | CCTTGTACAA | ATATTGTGTC | ACAACATTAT | CTGCTTGCAC | CTTCTCCAGA | AGTAAGGTAT | 2940 | |||||||||
2941 | CGTGTTTTTT | GCGATAATCA | TTTTTGGAGA | CTCCGTGAAC | ATCACTGTTG | TCCAAATTGT | 3000 | |||||||||
3001 | GGCATTTTTT | GTTCCCAGGG | GGAATTTTTG | TTGTGTTCTT | GTGAAGAAAC | AGAAAAGAAG | 3060 | |||||||||
3061 | GAAAACCATT | TATTCCACAC | AAATTGTTCA | ATTGTTGTTT | CTCCTGGTTT | GCCTCCCAGT | 3120 | |||||||||
3121 | TGCCCTCATT | GTTGTAAATT | TTCTAATTTT | AATCCTGTGC | ATTTAATATG | TAGATCTGCT | 3180 | |||||||||
3181 | CAATCAGAGC | AGAAAGAAGT | GCCTTCTCAT | TCTCAAAATA | TTACAAGTAA | TCTTCAAGGC | 3240 | |||||||||
3241 | TGTGACATAT | TTTTAATTCC | TAAACCAGAT | TCAGAGCAGC | AGGTGGAGCA | GGGGGATTCT | 3300 | |||||||||
3301 | ACAGTGTTTG | TTCCAGATAA | GAAAGAACTT | CGTGTAATGA | TAACATCTTT | GGCAAACGAA | 3360 | |||||||||
3361 | AGATCGTTTC | GTCTTCGTCC | AACTGGAAAA | TGTTTATATA | ATCCTATCAA | AACTGGTGAT | 3420 | |||||||||
3421 | ACTCAAAAAG | TTATGCAGTT | GATTGGTAAT | GGTGTAAATC | CAAATCACAA | GTTCAGAAGT | 3480 | |||||||||
3481 | CATAGCAATA | ATGCACCTAT | TCATGTAGCT | GTATATTATG | GCTGGACTGA | AATTCTTCAT | 3540 | |||||||||
3541 | ATTTTACTTC | AGGCTGGAGC | TTTCAGAGAT | TCAGTGAATG | ATGATCTTGA | AACTCCACTT | 3600 | |||||||||
3601 | ATTGTAGCTG | TGGAGAGGAA | TAATCTCTCT | ATAGTTCATT | ATTTGGTCAT | GGCTGGTGCA | 3660 | |||||||||
3661 | CAGATTGATG | TAAAGGATTG | TAATGGTATG | ACAAGTTTCC | ATATAGCATC | TAAAAATGGC | 3720 | |||||||||
3721 | TTCAAGGAAA | TAGCAGAGTT | CTTGTACAAC | ACAGGAACAG | TTGACATCAA | TCTCCAAGAT | 3780 | |||||||||
3781 | GATGGAGGTT | GGACTGCATT | AGTTTGGGCA | AGTGAACATA | AACATGTTGA | CTTTGTGAAG | 3840 | |||||||||
3841 | TGGTTGTTAG | ATATTGGAGC | AGACCCTAAT | GTGCGAGATA | ATGAGGAAAA | TACAGTTTTA | 3900 | |||||||||
3901 | CACTGGGCAG | CATACTCTGG | AAAGTCTGAG | ATTGCAGAAC | TGCTGTTAGA | CAAGGGCTGC | 3960 | |||||||||
3961 | ACATTAAGTT | ATGTCAATAA | GAGGGGAGAT | TCTGCCTTGC | ATATTGCTGC | ACGTGAAGAT | 4020 | |||||||||
4021 | AATTATGAAT | GTGTGAAGTT | ATTCATAAAA | AGGGGTGCTG | TTGTTGATCA | GAAAAATAAG | 4080 | |||||||||
4081 | GAAAATAAGA | CCCCTTTAAT | GTGCTGTCAA | GATGATTCCT | TGTCATTTAA | CTATTTGTGC | 4140 | |||||||||
4141 | CAATCTATAT | CATCTGGTGC | TTTAAAAATA | GGGAAGATGC | AATTAGAAAA | ACATGTTGTT | 4200 | |||||||||
4201 | TTCAGGGATA | TTTCACGAGG | AGCTGAAGCA | TACCCAATAC | AAGCCATAAA | TGAAGTTGAT | 4260 | |||||||||
4261 | GATGAGGAAT | TTATAATGGA | GTTTAGATAT | GTAGTCAAAA | ATTGTCATAG | ATCAGGAGTC | 4320 | |||||||||
4321 | AATATCAATA | TTGTCAGTAC | TGTAAACAAT | ATGCAGTTCT | GCACTTGTAA | AGATAACTGT | 4380 | |||||||||
4381 | GTCACCCGCG | ATTGTAACTG | CACATCTAAT | TCCAAATGTT | GGTATGATGC | TAGTGGATGT | 4440 | |||||||||
4441 | TTGACGAGTG | AATATGATTT | ACAGAATTCA | CCTGTCATAT | TTGAATGTAA | CAAAACCTGC | 4500 | |||||||||
4501 | CATTGTCCCA | AAACGTGTAT | TAACAGAGTT | GTACAGCAGG | GTTTGAGGTG | TCCATTACAA | 4560 | |||||||||
4561 | TTATTTCGAA | CCCGATACAA | AGGATGGGGT | GTTAGAACCT | TACAAGTCAT | ACCTAAAGGA | 4620 | |||||||||
4621 | GCTTTTGTTT | GTGAGTATGT | GGGAGAATTA | ATCACTGCAA | GAGAAGCTAC | TCACCGTGAT | 4680 | |||||||||
4681 | GATGACACAT | ACTTTTTTGA | TCTGGAGAGC | AAAGACTCAG | ATTATTGTTT | GGATGGTCGT | 4740 | |||||||||
4741 | TATTATGGAA | ATGTAGCCCG | TTTTCTCAAT | CATAGCTGTG | ATCCAAATTT | GATGGCAGTA | 4800 | |||||||||
4801 | AAAGTATTTG | TTGAGCATCA | AGATTTGAAT | TTTCCTCGAA | TTGCTTTTTT | CGCTGTTAGG | 4860 | |||||||||
4861 | AGGATACAAG | CATTTGAAGA | ACTATGCTTT | GATTATGGCT | TGGATTTTTG | GATTGTGAAG | 4920 | |||||||||
4921 | TGTCAAACTA | TTTTATGTAC | CTGCAACACT | GAGTCATGTA | AATATTCGAA | AGATACCATT | 4980 | |||||||||
4981 | GATGATACTC | TCACAAAATT | CTTTAAAGAT | ACCAGGAATG | GAGCACAGTT | TGAATCTGAG | 5040 | |||||||||
5041 | TCA | 5043 |
Single Nucleotide Polymorphisms | ||||
55 | G= 0.80 | A= 0.20 | ||
1508 | A= 0.81 | G= 0.19 | ||
1744 | C= 0.87 | T= 0.13 | ||
4206 | G= 0.65 | A= 0.35 | ||
4308 | T= 0.57 | C= 0.43 |