CSH_0147_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGCTAAGGC | AAAAAAATAA | GGAAATAAAT | AAACTCTTAA | GATTACCAAT | GGAAGCCCTG | 60 | |||||||||
61 | CCTGATGCTG | AGATTTTTGG | AGGAGCTTTA | AGTGCTGTGG | CTGATAATGG | ACCTTCTGAT | 120 | |||||||||
121 | ATGTCTGCTA | AGTTAAAACT | AATGAAAGGA | ATGGAGAGCA | TGTTCACAGT | TATGAATGAT | 180 | |||||||||
181 | ACTGAGGTTC | CACACCCAGA | AGATCTGAAA | ATTGTTATCA | GCCAGTTTGG | TAGCATAGCT | 240 | |||||||||
241 | GATTCAATAG | CTGGTTCTTT | GGCAGATTCA | AATATAGGAG | GGAATTTCCT | TCCCAGTGAG | 300 | |||||||||
301 | CTTAAAAAAG | CTCGGCTAGA | GCTGGACCAT | AATGCAACTG | AACCTAACTT | TTTTATTTTG | 360 | |||||||||
361 | TATGTTGAAG | GTAATAGGAA | AGAAGTTCAA | GAAAAATTAA | ATGGCCGTAC | AGTTGAAGCT | 420 | |||||||||
421 | GCTAAAAATG | ACCAAGAAAG | TAATGCAAAA | GTTATGGTAA | ACAAAATGAA | AGACATGGTG | 480 | |||||||||
481 | TCTAATATAC | AGCAAAACTG | TATGGAAGAA | ATCATGGTTG | GAGCAGATCC | ATTTTATGCT | 540 | |||||||||
541 | GAATCAAAGA | GTGGATTTCA | AATGACTATT | GTGAAAAACT | TTGCTTCCAA | TCTTACTGGA | 600 | |||||||||
601 | AGTGTCATTC | AACAAAGTGG | GTCATCTGTT | ACTTTACCTG | ATTTGTGCCA | AGTTCTTGAG | 660 | |||||||||
661 | GGTGAATGTG | ACAGTGGGGA | TCCAGCTTTT | GGAGTTCAAT | CTGTGCGCTG | GACACAACCT | 720 | |||||||||
721 | CTGGAATCCT | ATGGATCTGG | GTCTGAAAAC | TTGTCTGACA | GTTCTAATGT | AATTCAAATT | 780 | |||||||||
781 | GATATTACTT | CCCGCAATGG | TTCTGACGCC | ATTCAAATAA | CTAATTCTTC | AGAACCTTTT | 840 | |||||||||
841 | ATAATATGTA | TCCCACGTTC | AAGTAGCTCT | GAAAGCAACA | TGGAGTATGT | GGTTCCCAAA | 900 | |||||||||
901 | TTTTCAAGAT | CAGATGACAT | CTTGGTTTAT | CATACTTCAT | TCATAGATTC | TTCAGGTGTA | 960 | |||||||||
961 | GCTGTTACAG | TGAATATTGC | ACCAACTAAT | GCAACAGCTC | CCTTAGTTCT | TCTTTTCAAG | 1020 | |||||||||
1021 | TATGGAGAGC | AAGCATCTTT | GTTGGATTAT | GATGATATTG | TAAGAGTTAA | AGATATACCT | 1080 | |||||||||
1081 | TCTGAAAATG | GTCTTCATAC | ATTCATTATT | GGTGCTGAGT | ATATTACTGA | GCCTGAGAAG | 1140 | |||||||||
1141 | AATTTATCAG | TTGCTATTGG | CCACTTTTCA | AATAACACAA | ATATGAATAA | ATTTTTCAAA | 1200 | |||||||||
1201 | AATCCAAAAA | AATATGACCT | GACAGTAACC | AATATGACAA | ATGTGTTCAC | TTCAAACTAT | 1260 | |||||||||
1261 | TCAATTGCCA | TAGCTGCCAC | TGGTTGTTAT | TATTTTAATG | AAGAAGAAGA | AAAATGGAGT | 1320 | |||||||||
1321 | ACTGGTGGAT | GCAAAGTATC | TGGAATAGAA | CCTGATGTTA | CTTGCTGTGA | GTGTAACCAT | 1380 | |||||||||
1381 | CTCACCTCAT | TTGGAAGTGG | ATTTTTTGTA | GCTCCCAATG | AAATTGATTT | TAATTACGTA | 1440 | |||||||||
1441 | TTTGCACATT | CAGATTTTCA | AACAAATAAG | ACAATTTATG | CTACCCTTAT | TGTAATGTTT | 1500 | |||||||||
1501 | TCTGTGTTCA | TTATTTTACT | TATCTTTGCT | CGCTGGAAGG | ACAGGAAGGA | TGTTCAAAAG | 1560 | |||||||||
1561 | CTGGGAGCTA | CTCCTTTACC | TGATAATGAA | GCCTCAGATA | AATACATCTA | TGAGATATTA | 1620 | |||||||||
1621 | GTGTTTACTG | GGCACCAAAG | AAATGCAGGA | ACAAAATCAA | ATGTATTCTT | CATTGTTTCT | 1680 | |||||||||
1681 | GGAGAAGAAG | ATGAAACAGA | AGTCCGTCAT | CTTGCTGATG | ACAAACGTCC | AATATTGCAA | 1740 | |||||||||
1741 | AAAGGATCCA | TTGATGTTTT | TGTTATGGCT | GTTCCTCGGT | CTCTTGGTCA | ATTAAATTAT | 1800 | |||||||||
1801 | TTAAGAATTT | GGCATGATAA | TTCTGGCACT | GGCAAGTGGT | CCTCTTGGTA | TTGCCAATAT | 1860 | |||||||||
1861 | ATTGTGTTCA | GAGATGTACA | GACAGGTTTG | AAGTATGAAT | TTTTGGTGAA | TAGATGGTTC | 1920 | |||||||||
1921 | GCTGTTGAAC | ATGATGATGG | ATTGATTGAT | CGCCTCATTC | CAGTTGCCGG | AAGAGAACAA | 1980 | |||||||||
1981 | GTGACTGAAT | TTTCCCATTT | ATTTTCTACC | AATTCCCGCC | GAAACTTAGC | AGATCGCCAT | 2040 | |||||||||
2041 | CTATGGTTTT | CAGTGTTTTT | AAGACCACCA | CGTAGTCGTT | TCACAAGAGT | TCAACGAGTT | 2100 | |||||||||
2101 | TCTTGCTGTA | TGGCTGTACT | CTGTTTATCC | ATGTTGACCA | ATGCTATGTA | CTATCAAAGA | 2160 | |||||||||
2161 | ACAGCAGCCA | AACCAGGAAC | CGGTGGTTTT | AAGTTTGGTC | CGCTCTCTCT | TAGTCCTGAA | 2220 | |||||||||
2221 | CAGATAGCTG | TTGGAGTTGT | GACAAACTTA | TTGATATTTC | CCCCGACCTT | TATTATGATA | 2280 | |||||||||
2281 | TTTTTCTTCC | GAAAATCCCG | ACCCAAAAAA | TTACGTCCAT | CACGCATACA | AGAAGCTCTC | 2340 | |||||||||
2341 | AAAAAACAAA | GACAAGAGTG | GAAAAAAAAG | AATCCAGAAA | AGCCTCTTGC | AAAGCCTCGT | 2400 | |||||||||
2401 | ACCATGACTG | AAGCAGAAGC | TCAGTTGTAC | CATCGAAAGA | AAAAATTTTC | CCTCCCATGG | 2460 | |||||||||
2461 | TGGTGTGTGT | ATTTTGGGTG | GCTCTTTGTG | ATTGCCTCTC | TTGGATCTTC | TCTCTTCTTT | 2520 | |||||||||
2521 | ATTTGGGCGT | ATGGAATTGA | ATTTGGAGAT | GAGAAAACTT | CAAAGTGGCT | TACTTCTCTT | 2580 | |||||||||
2581 | GTTATATCAT | TTTTCTCATC | AGTACTTATC | ACACAACCCA | TTAAAGTAAT | ATTAATGGCA | 2640 | |||||||||
2641 | ATAGTGGTAT | CTTGCATGTG | TCGCTCCATT | GATTATGATG | AAGATGATGC | CGACGAGGAT | 2700 | |||||||||
2701 | GAAGAAGATC | CTCAACTTCA | GACGGATGAA | GTATATTTAC | ATGATCGCAA | GAAAAGTAAA | 2760 | |||||||||
2761 | AAAATTACCT | ACCGTCCAAT | GGACCTTGAA | GCATTGGAGG | AAGCCAGAAA | AGAAAGAGAG | 2820 | |||||||||
2821 | AAAGAAGTAA | AAATGTATAG | TGTGATGCGA | GAAGTCGCTG | CATACTTTTT | TTTCTTGTGG | 2880 | |||||||||
2881 | ATTATCATGA | TTCTTAGTTT | TGGAAACAGA | GACACTAATA | ATTTTTTTCT | ACGTGAAGCA | 2940 | |||||||||
2941 | TTGATAAATG | GTTTCGTTAA | GCCTGGAGAT | TTATGGGTAG | ACTATAACTT | CGTAAATACA | 3000 | |||||||||
3001 | GAAAGAAAGT | TTTGGAACTG | GACCCACAAT | GCACTGATTC | CTGAGTTGTT | TGCTGTGAAG | 3060 | |||||||||
3061 | TGGTACAATG | GTAGAGATCC | TTTAGGCTTA | CGGTTATTTC | TTGATGATCG | CAATAATCTC | 3120 | |||||||||
3121 | AAAATTGGAT | ATGCTGTTCT | TCGACAAGTC | AGGATAAAAC | CTAATAGCTG | CAAGGTGTCA | 3180 | |||||||||
3181 | TGGCTCTTCG | AATCTATTAC | GTCGGAATGT | GCTGGATTTG | GCAGTGTTGT | TTTTGAAGAT | 3240 | |||||||||
3241 | GGTACTCTTT | ATACGAAAGG | TTGGAGGACA | GTCAATTCCA | CTGACACACT | TGTGCCTCCC | 3300 | |||||||||
3301 | GAGTATAAAT | ATCTGTCTGC | GTCACAGCTG | AAGGGTTATC | CATTCTGGGG | TCAGATGGAC | 3360 | |||||||||
3361 | TGGTATGGGG | GAGGAGGATA | CGTTGTTGCA | CTTGTTTCTG | TGAGGGACAG | CGACGTCGTT | 3420 | |||||||||
3421 | GAGCTCAGTA | AGAAAGTAAA | AAGGCTTGAA | GTGGATGGTT | GGATTGATAG | ACACACCCGG | 3480 | |||||||||
3481 | GCAGTATTTG | TTGAATTTGG | TATCTACAAT | GCACAGATAA | ACCTCTTTTG | TGCCGTCACC | 3540 | |||||||||
3541 | ATTTTAGCCG | AGTTCCTTCC | AGGAGGTGGG | GTAGTACCCT | ATTACCACAT | CGACCCTGTG | 3600 | |||||||||
3601 | AGACTTTTGA | ACTATCATAC | TGGCTTTGGA | TTTTTCCAAA | TGATCATTGA | GATTATTTTC | 3660 | |||||||||
3661 | GTACTATTTA | CGATATTCTT | CACATTTAAA | GAGATAAAAA | AGATGGGTAA | AGAAGGTTTT | 3720 | |||||||||
3721 | TCATATTTCA | AAGAATTCTG | GAACATGGCG | GAGTTAGTGA | GCATAATCGT | CTCTTACACT | 3780 | |||||||||
3781 | GGCATTGCAA | ATCAGATTTA | CAAGCTGTTC | ATGACAGCTG | AAATTTTACG | AATATTTACT | 3840 | |||||||||
3841 | GAAACAGAAG | GCACTGGTTA | CGTGAAGTTG | CAGGAAGCTG | TGCTTTTGAA | CGATCTTCTC | 3900 | |||||||||
3901 | TGTTACCAAA | TTGGTTTAGT | GATGTCTATA | TCGACACTGA | AGTTTTTGAA | GCTGCTCCGT | 3960 | |||||||||
3961 | TTTAATAAAA | GGATCGGAAT | ATTGAGTAGC | ACATTACGCA | TGTGTGCGCA | TGAGCTGAAG | 4020 | |||||||||
4021 | AGTTATTCGG | TCTGTCTGAT | GGTGGTGTTC | GTAGCCTTCG | TCATTCTCTT | TTGGCTCCTT | 4080 | |||||||||
4081 | CTCGGGAGAT | ATGTCCGAGA | GTTTTCAACT | TTCGTGTACT | CTTTTGAATC | ATCCATCAGC | 4140 | |||||||||
4141 | ATGATGTTGA | AGAAGTTCAA | TTATGAAGAC | ATGTATGCCG | CTCAACCTGT | TTTCACGCCA | 4200 | |||||||||
4201 | ATTGCATTCT | TTACATTCTC | GTTAGCTACA | GCTGTGGTGC | TGGTAAACAT | TCTTCTGAGT | 4260 | |||||||||
4261 | ATCATCATCA | GGTCCTTTGA | GGACGTGAAG | CGCGATGTCA | GTTTGCAAAG | CAACGAATAC | 4320 | |||||||||
4321 | GAGATTTTAG | ACTTTTTCAT | TAATCGGATG | AAGATGATGA | TAGGCTGTGG | TACTGCAAAA | 4380 | |||||||||
4381 | GTTCGCCCTC | AGCCAAGCAT | GTACCGTGAA | CAGAAGAAAC | CAAAAGACAC | GGTTTCGTCT | 4440 | |||||||||
4441 | TTCCCAGACA | AAGTTGACAA | ACTAGTGGAT | TTCATTAACG | ACTTCTACTT | TGAGAATCAA | 4500 | |||||||||
4501 | ATGGATTTCA | ACAGTAAAGA | TTTCTTGAGG | AAAATGAATG | CTGACATTGC | TAGAGCCAAC | 4560 | |||||||||
4561 | GGGGTTGTTA | ACAGGGAAAG | GAAGAAAGCA | AAGCCAGTTA | AAGCTTTGAG | GAGCAAGATA | 4620 | |||||||||
4621 | CCCAAAAGTG | TTTCAGATCG | TTTTGATGAT | TTT | 4653 |
Single Nucleotide Polymorphisms | ||||
11 | A= 0.60 | C= 0.40 | ||
616 | A= 0.89 | G= 0.11 | ||
1205 | C= 0.89 | T= 0.11 | ||
1338 | A= 0.88 | T= 0.13 | ||
1371 | G= 0.78 | A= 0.22 | ||
2382 | G= 0.73 | A= 0.27 | ||
2511 | T= 0.62 | C= 0.38 | ||
2652 | T= 0.53 | C= 0.47 | ||
2841 | T= 0.67 | C= 0.33 | ||
3055 | G= 0.52 | A= 0.48 | ||
3390 | A= 0.55 | C= 0.45 | ||
3502 | A= 0.62 | G= 0.38 | ||
3507 | C= 0.61 | T= 0.39 | ||
3636 | C= 0.55 | T= 0.42 | G= 0.03 |