CSH_0156_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGAGGGCGG | TCAGTAACGC | CTGCCGCTGC | GTCGCCTGGG | CTTTTCTTTG | TCTTCCATTG | 60 | |||||||||
61 | CTTCAAGCTA | AGGATCTGTA | TCCTTTCTTG | GACGACTCTC | TGTTAAGGCT | AGAAGAAACG | 120 | |||||||||
121 | GGATCGGACG | AATACGAGGA | GGGTGCCCAC | TTACAGAACC | GACTTTACGA | CAGTGTTGAG | 180 | |||||||||
181 | GACCAGTCCG | GAGAAGGTGC | TGGATGGACA | GAATGGGGTT | CGTGGATGAC | GTGTTCCCGG | 240 | |||||||||
241 | AGCTGCGACG | GGGGCATTGC | CATCAGCCTC | CGAAAGTGCA | GAGGCCGATG | TCCCCAAGGA | 300 | |||||||||
301 | GAACCCATCC | GCCGTCAGAT | ATGTAACATG | CAGCCATGTC | CAGAGCCAAC | GGATTTCCGC | 360 | |||||||||
361 | GCCGCACAGT | GTTCAGCCTA | CAATAACCGT | CCGTACAGGG | GGCGCCTCTA | CCGGTGGCTG | 420 | |||||||||
421 | CCCTTCCACG | ATCCCGAGGA | TCCCTGTGTC | CTGGCCTGCC | AAGCCGAAGG | ATTCGGGTTC | 480 | |||||||||
481 | GTCGCCAAAC | ATTCGAAGAA | AGTTCACGAC | GGGACACGAT | GCCGAGAGGG | AGCCCTCGAT | 540 | |||||||||
541 | ATGTGTGTGG | AGGGTCAATG | CCAGCCCATT | GGTTGTGACT | TGCGTGTCGG | ATCCACATTG | 600 | |||||||||
601 | AAAGTGGACG | AGTGTGGCGT | CTGCGGCGGA | GATGGATCCC | AGTGTCACAG | ACCTACCTTC | 660 | |||||||||
661 | GTTTGGAACG | AGGGAACTTT | CGGGGCATGC | TCAGTAACGT | GCGGAGGAGG | CATTCAGCTC | 720 | |||||||||
721 | TCCGAAGCAA | CCTGTCGCAA | CAAGGAGACC | AATGAGGAAG | TAGATCCCCG | CCTCTGCAAT | 780 | |||||||||
781 | CTTTCAATCC | GGCCACGAAC | AAAAGCCATG | CATTGCAACC | GCGAACCTTG | TCCTGTTGTG | 840 | |||||||||
841 | TGGGAAGCGG | GCGAATGGGG | ACCGTGCTCG | GCCACCTGCG | GCCCCGGGGT | CCAGTCCCGG | 900 | |||||||||
901 | CCGGCATTCT | GTGTTCAGGG | TGGACCCAAC | GGTTCGAGGA | TAGACGTAAA | GACTCAGTTC | 960 | |||||||||
961 | TGCCCTGCCC | ACAAACCACA | GACGGAAAGG | TCTTGCGTCG | TCGAGGAATG | CCCTAGGTGG | 1020 | |||||||||
1021 | TTCCAGGGCG | CATGGACGCC | GTGCTCCGTC | ACCTGTGGTC | ACGGAATTCA | GACGAGAGCA | 1080 | |||||||||
1081 | GTCGTTTGTC | GCGACACCAA | GAATCAATAC | AGCGAGAACT | GTGATCTGAG | TGAAATGCCC | 1140 | |||||||||
1141 | CGCCCTCAGA | GACCTTGCGA | CACCCGCACT | TCATGTCCCA | CCCCGCCCAC | GGATGATGGT | 1200 | |||||||||
1201 | TCCACGCCCC | AGCAACCATG | CGTGTACACC | CCGAGCACTG | AAGATGAAAT | CTACCCTACC | 1260 | |||||||||
1261 | ACCACCGAAG | AAGCTACTAC | AGAAATGGAA | CCCGTTATCA | TGCTCACCGA | AGCACCCCAT | 1320 | |||||||||
1321 | AACCTGACGG | ACGGTGCGGG | TCCCATGTAC | TTTGTCGGGC | CGTGGGGACG | TTGCAACGGA | 1380 | |||||||||
1381 | CAGGGTTTTC | GTCAGAGGGC | TGTCTACTGC | CGGGTCTTCA | TCGAAATGTC | CAAAACTGCG | 1440 | |||||||||
1441 | GCAAGGCTGC | CAGACTCACA | GTGCACTGAT | ATCCGACCTA | TAGATGTAGA | GCCCTGTGCC | 1500 | |||||||||
1501 | ATCTCTTGCC | CGCCGCCCTT | TCCTCCCCGC | CAGGTAGTAG | CCCCCGTGAA | GGTGGTAGAC | 1560 | |||||||||
1561 | CAGATCGAGT | CCGAAGATCT | CGAACCAGAG | AAGATGGAAT | CATTCCACTC | CTGGAACACA | 1620 | |||||||||
1621 | GAGAAGTTCT | CGCCTTGCAG | TGCGTCTTGC | GGGGGAGGCC | TGCACACGTC | TCTAGTCCGG | 1680 | |||||||||
1681 | TGCCTGCGCC | TCCCGGATCA | AGTGGAAGTC | TCTCCGCAGT | TGTGTGATCC | GGACATCAAG | 1740 | |||||||||
1741 | CCGGAACCTC | TGACTAAGCG | ATGCAACCAG | CAGTCATGCC | CAGTCAGCTT | TAGGTGGAGC | 1800 | |||||||||
1801 | GTGTCCGAAT | TCGGCAACTG | TTCTCGAGAG | TGTGGCGGTG | GCATCCGTTC | CAGGCTGGTG | 1860 | |||||||||
1861 | AGATGCATAC | AAGTGGAGAA | CGATGAGGCG | TCTCCGTACA | GCCAGTGCAA | CGGCCTGCCA | 1920 | |||||||||
1921 | CCCAAAGCGA | CGGAGAACTG | CAACGTGTTC | GACTGCCCGG | CGCAATGGAA | GACGGAGCCG | 1980 | |||||||||
1981 | TGGAGCAAGT | GCTCCAAGAC | GTGTGATGGG | GGTTTCCAGA | CCCGGAAACT | ACTCTGCGAA | 2040 | |||||||||
2041 | AAAATCCTGG | CGCCTCTGAG | CCAGGCTGTG | CTTCTACCTC | CCTCCAAATG | CGTAAAGACC | 2100 | |||||||||
2101 | AGGCCCAAGG | CGGTCAAGAG | GTGCAACCTT | AAGCCATGCC | CGCTTCCACC | AACACCAAGA | 2160 | |||||||||
2161 | ACCACCTCGA | CCACAACCAC | CACCACCACT | CCAACCACAA | CAACGGAGGA | AGAAGAAACA | 2220 | |||||||||
2221 | GCTTTGGAAG | GTCAAATATT | CGATCAAAAA | TATCCCAACA | GGCGGGTGAA | CCTGAAGGCT | 2280 | |||||||||
2281 | TCTGGGCGGG | CGATCCTCTT | CAAGGGCTCC | AACGCCAAAT | TCCACTGCCC | TCTCAACGGA | 2340 | |||||||||
2341 | ACTGGGATCG | GCCACGCCAA | CGGGAGCCGG | GTGCTCTGGT | TCAAGGGCCA | CCTCCGCATT | 2400 | |||||||||
2401 | CCACCTTCCA | CCACCAACGG | ATGGCCCCGA | GTGGCCGTCT | CCGGGAAAGG | GGCCTTGCGG | 2460 | |||||||||
2461 | ATCCACAAGG | TCGCCTTCGG | AGACGAGGGG | ACCTACACGT | GTCTCGCGGG | CGCTTTCCAA | 2520 | |||||||||
2521 | AGTGATGTCG | AACTGAAGGT | CAAGCCTTTG | CCTCCCAGAC | AGCCAGAATT | TTTCGTCGAT | 2580 | |||||||||
2581 | TCCAGTTCGG | TCGCAGCCAC | GACTCCGACT | CCCTCCACAC | CCAGTCGCAA | GGTGACGAAC | 2640 | |||||||||
2641 | CGTTCTGCCC | TGCCACAAGT | ACGTCACTTC | TTGGTCAATT | TACGTCACTT | CGAAGAAGAA | 2700 | |||||||||
2701 | CGCCTGCAGT | CCGACCCTAT | TGTTCTAGAG | TACGACTGGG | TCGTAGGGCC | TTGGTCACAG | 2760 | |||||||||
2761 | TGCTCCCAAA | CTTGCGGTGA | AGACGTAATG | CAAGTAAGAA | CAGCGGACTG | CCGTGTTCGA | 2820 | |||||||||
2821 | GTGCTGGGTA | ACGCGACCCG | CATCGTGTCT | CGAGGTCTCT | GTATTGACGG | GGGTCTTCTC | 2880 | |||||||||
2881 | GAACCATCGA | CTATCCGGCC | ATGCATACTC | GATCCCTGCC | CTGAATGGAT | CACATCCGAG | 2940 | |||||||||
2941 | TGGTCAGAGT | GCTCATCGAA | GAACTGCCTG | TCGTGGAACA | TCGCGTACCA | GAAGAGGAGC | 3000 | |||||||||
3001 | GTCCTGTGCG | GGGTCGCCAA | TCGCACCGTT | ACGCCCAGCT | ACTGTGATAG | TAGGAAGAGG | 3060 | |||||||||
3061 | CCTCGACGCA | AAAAAGAGTG | CCACAACGCC | GACTGCAGGG | GCACATGGAA | GGTCAGCCAG | 3120 | |||||||||
3121 | TGGACGAAGT | GCACAGCTAC | CTGCGGCAAC | AAGGGTTTCC | AGACTCGTGG | TGTTCAGTGC | 3180 | |||||||||
3181 | GTATGGCACG | GCGCTCAAGA | GCCGGCGCCC | TCCAGTGCTT | GCAAAGGAGC | CACTCCACAG | 3240 | |||||||||
3241 | ACCTCCATCG | CCTGCGGCAG | GGTACCCTGC | CAGGAAGAGG | AGGAAGAAGA | CTGCTTCGAC | 3300 | |||||||||
3301 | CAGTCGACGT | ATTGCAGCGT | TGTGAAGAAA | ACTAAGCTCT | GTGAAATAAG | CCAATTCCGA | 3360 | |||||||||
3361 | CTGCAGTGCT | GCGCCTCGTG | CAGTAAGAAG | 3390 |
Single Nucleotide Polymorphisms | ||||
1211 | A= 0.81 | G= 0.19 | ||
1375 | A= 0.88 | G= 0.13 | ||
1444 | A= 0.78 | G= 0.22 | ||
1756 | A= 0.71 | G= 0.29 | ||
1782 | A= 0.82 | G= 0.18 | ||
1925 | A= 0.82 | G= 0.17 | ||
2454 | C= 0.80 | G= 0.20 | ||
3052 | A= 0.72 | G= 0.28 | ||
3138 | T= 0.63 | C= 0.37 | ||
3208 | C= 0.56 | T= 0.44 | ||
3261 | G= 0.60 | A= 0.40 |