CSH_0172_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGCCTGATA | TGAGCGCGAC | AAATGTTGAA | AATGCCGCTG | ATGCAACAGA | AGTCACCAAA | 60 | |||||||||
61 | AGTGCGGCAC | AGCTAAAAAA | AGAAGCGAAA | AGAAAAGAAA | AACTAGAAAA | ATTTAAGCAG | 120 | |||||||||
121 | AAGCAAGAAA | AAATTCAAGC | AAAATCTCAG | AACGTTGATA | AAGCCCCGAA | AAAAGTGAAA | 180 | |||||||||
181 | GAAAAGAAGG | AAAAGGAAGT | CCTTGTTTAT | GATAAAACTA | TAACACCTGG | AGAGAAAAAG | 240 | |||||||||
241 | GATATTTCTG | GTCCTATGCC | TGATGCATAC | AGTCCTAAGT | ATGTTGAGGC | TGCATGGTAT | 300 | |||||||||
301 | GCATGGTGGG | AAAAATCTGG | ATTTTTTAAA | CCTGAATATG | GAAATAAAGA | TTTTAGCCAT | 360 | |||||||||
361 | GTGAATGATA | GTGATAAGTT | TGTAATTGTT | ATTCCACCAC | CAAATGTTAC | TGGCAGTTTA | 420 | |||||||||
421 | CATGTTGGAC | ATGCTTTGAC | TAGTGCAATA | GAAGATAGCA | TTACACGGTG | GAATAGAATG | 480 | |||||||||
481 | AAAGGTAAAG | TAACATTATG | GAATCCTGGT | TGTGACCATG | CTGGAATTGC | TACTCAGGTT | 540 | |||||||||
541 | GTAGTTGAGA | AAAAAATTTG | GAAGGAACAG | CAGAAACGTA | GGCATGACCT | CGGAAGAGAA | 600 | |||||||||
601 | AATTTCATTA | ATGAAGTTTG | GAAATGGAAA | GAACAGAAAG | GAAATAGAAT | TTATGAACAA | 660 | |||||||||
661 | CTTCGTTTGA | TGGGTTGTTC | TGTAGATTGG | GATAGAGCTA | CTTTTACCAT | GGACCCTAAA | 720 | |||||||||
721 | GCCTGTCGTG | CTGTCACTGA | AGCATTTGTT | AGATTACATG | AAGAGGGACT | GATTTATCGT | 780 | |||||||||
781 | GCAAATCGAC | TTGTGAACTG | GTCATGCACT | TTGAAGTCTG | CCATTTCTGA | TATAGAAGTA | 840 | |||||||||
841 | GATAAATTAG | AGCTAACTGG | CAGAACACTT | CTGTCTGTCC | CTGGATATAC | TGAAAAAGTA | 900 | |||||||||
901 | GAATTTGGAG | TGTTGGTTTC | TTTTGCTTAT | CCTGTTGAAG | ATTCTGATGA | AGAAATAGTT | 960 | |||||||||
961 | GTTGCCACCA | CTAGAATAGA | AACCATGCTT | GGAGATTCTG | CAGTTGCTGT | ACACCCTAAT | 1020 | |||||||||
1021 | GATCCCCGTT | ATACTCATCT | GCATGGCAAA | TTTGTGTTGC | ATCCTTTCTG | TTCTAGAAGA | 1080 | |||||||||
1081 | ATGCCTATTG | TTTGTGATGA | CTTTGTTGAC | ATGGAATTTG | GAACAGGTGC | TGTTAAGATA | 1140 | |||||||||
1141 | ACTCCTGCAC | ATGATCCTGC | TGATTATGAA | GTTGGAATGA | GACATCAGCT | ACCATTTATA | 1200 | |||||||||
1201 | AATATTTTGA | ATGATGATGG | AACAATGAAT | AACAACTGCG | CTGAGTTTTC | AGGAATGAAA | 1260 | |||||||||
1261 | AGATTTGAAG | CTAGGAGAAA | GGTTTTAGGA | GCTTTAAAAG | AAAAGAATTT | GTACAGAGAC | 1320 | |||||||||
1321 | ACTAAAGATA | ATCCCATGGT | TGTTCCAGTT | TGTAGTCGAT | CAAAAGATAT | TGTTGAACCT | 1380 | |||||||||
1381 | CTATTAAAAG | TACAGTGGTA | TGTTAAATGT | GATGGTATGG | CCCAAAAAGC | TATGGAGGCT | 1440 | |||||||||
1441 | GTCAAAGAAG | GAAAACTGAA | GATTTATCCT | GAAGTTCATA | TCAAGACTTG | GAATCACTGG | 1500 | |||||||||
1501 | CTTGAAAAAA | TTAGGGATTG | GTGTGTTTCA | AGGCAGTTGT | GGTGGGGTCA | TAGAATTCCT | 1560 | |||||||||
1561 | GCCTATTATG | TGACAATAAA | GAATGCTCCT | CCAGCTGCAG | ATGTACAAGA | AGAAAATGAA | 1620 | |||||||||
1621 | AGGTGGGTAA | GTGGCAGAAA | TGAAGAAGAA | GCCAAAGAAA | AAGCTGCAAA | AAAATTCAAT | 1680 | |||||||||
1681 | GTTTCTCTAG | AAGATGTGGA | ATTGAAGCAA | GATGAAGATG | TGTTGGATAC | TTGGTTTTCA | 1740 | |||||||||
1741 | TCTGGACTTT | TCCCATTTTC | TATTTTTGGC | TGGCCTGAAC | AGACAACTGA | TCTGAAAGCT | 1800 | |||||||||
1801 | TTTTATCCTG | GAACACTCTT | AGAAACAGGG | CATGATATTT | TATTTTTCTG | GGTTGCTAGA | 1860 | |||||||||
1861 | ATGGTAATGT | TAGGTATTCA | GTTAATGGGA | GAGTTGCCTT | TTAAAGAGGT | ATTTCTTCAT | 1920 | |||||||||
1921 | TCTATTGTAA | GAGACGCTCA | TGGTCGAAAA | ATGAGCAAAT | CACTTGGAAA | TGTAATTGAT | 1980 | |||||||||
1981 | CCCATTGATA | TGATTAATGG | CATATCCCTT | GAGGCATTGC | ATGCCACTCT | TTTAGATTCA | 2040 | |||||||||
2041 | AACCTAGATC | CAAAAGAAAT | TGACAAAGCT | ACCCAGGGGC | AGAAAGCAGA | CTTTCCTAGT | 2100 | |||||||||
2101 | GGTATTCCTG | AATGTGGTAC | TGATGCTTTA | AGATTTGCTC | TTTGTGCATA | CACTGCCCAA | 2160 | |||||||||
2161 | GGTCGAGATA | TTAATCTAGA | CATAAATCGA | GTAGAAGGCT | ATAGACATTT | CTGTAATAAG | 2220 | |||||||||
2221 | CTCTGGAATG | CAACTAAATT | CGCTCTAATG | TCCCTTGGTG | ATGATTTTGT | TCCCAAAGAA | 2280 | |||||||||
2281 | AAATTCAAGT | TATCTGGAAA | TGAAAGTGTT | ATGGATATGT | GGATTTTAAG | TCGGCTGTCC | 2340 | |||||||||
2341 | TCTGCAATTA | AAACTTGTAA | TACTGGTTTT | GAAACATATG | ATTTCCCTGC | TGCTACTACA | 2400 | |||||||||
2401 | GCATGCTATG | CATTTTGGCT | CTATGATTTA | TGTGATGTTT | ATTTGGAATC | TCTAAAACCT | 2460 | |||||||||
2461 | GTGTTTCAAG | GCTCAGATAA | AGCTGCTGCT | GAAACCTCTA | GAGAAATGTT | ATATACTTGC | 2520 | |||||||||
2521 | TTAGACACTG | GATTAAGACT | TTTGAGTCCC | TTTATGCCAT | TTGTTTCCGA | AGAACTTTTC | 2580 | |||||||||
2581 | CAAAGATTGC | CTAGAAGAAA | GGGAGATGCT | ACTCTAAGTA | TTGTTGTATC | TCAGTATCCA | 2640 | |||||||||
2641 | TTGCCAGATC | AGTATCCGTG | GGAAAATGCT | GAACTGGAAA | AGTCTGTTTC | ATTTGCCTTG | 2700 | |||||||||
2701 | AACGTGATTC | ATAAAGTTCG | ATCCTTGAGA | GCAGATTATA | ATCTGCCTAA | AAATGAAAAA | 2760 | |||||||||
2761 | TTGGACTTAT | TTTTAAAGTG | CGATGATGAA | GACACCAAGT | CATCACTAAA | TAGTCTTCAA | 2820 | |||||||||
2821 | GAAACAATTT | TATTCCTTAC | ATCCTCAGCC | ACTGTTCATA | TTTCAGAAGA | GATTCCTTCA | 2880 | |||||||||
2881 | GGTTGTGCCA | TCACAACAAT | ATCTGAGAAC | TGTGAGGCTC | ATTTACTGCT | AAAGGGTCAC | 2940 | |||||||||
2941 | ATAGATGTTA | GTAAGGAAAT | CTCTCGGTTA | GAGCAAAAAC | AGGAAAAATT | ATCTTCCCAG | 3000 | |||||||||
3001 | ATCACCAAAT | TAAGACAAGC | AACTCAAGTC | CCAGACTATG | AAAGTAAAGT | GCCTGAATCT | 3060 | |||||||||
3061 | GTGCGAGAAT | CTCATGCAGA | AAAGATTTCA | TTGACTGAAG | GAGAATTAAG | CAAAGTGCTA | 3120 | |||||||||
3121 | CAAGCCATAC | AGACTCTAAA | AATTATGGAC | 3150 |
Single Nucleotide Polymorphisms | ||||
828 | T= 0.80 | C= 0.20 | ||
1079 | G= 0.67 | A= 0.33 | ||
1281 | G= 0.63 | A= 0.37 | ||
1415 | G= 0.82 | C= 0.18 | ||
2202 | T= 0.71 | C= 0.29 | ||
2781 | C= 0.64 | T= 0.36 |