| CSH_0193_Complete Single nucleotide polymorphisms | ||||||||||||||||
| 1 | ATGGATATTA | GAAAATACTT | TCAAGACAGT | TTGCTGATTA | TATTGCTTAT | AGGCATCCAG | 60 | |||||||||
| 61 | CATGGACTTT | GTCGGCTAGA | TGATGACTAT | GAAGATGGTC | CTGTAGTTGG | GCGATGCCCT | 120 | |||||||||
| 121 | TGGATTCGGA | ACAAATTAAA | GAATGGACGT | GTGAGATATC | GTTATAAAGG | AAGAGTTGCG | 180 | |||||||||
| 181 | AAGTTTCTGT | GTGATTCTGG | TTACGAACTT | GCTGGGAAGA | GGTCTACTAC | ATGTGTACGG | 240 | |||||||||
| 241 | GGACAATGGA | GTAATCCTAT | TCCAGTATGT | GTAGCAAGGG | GATGCAACAG | AGTGCCTTCC | 300 | |||||||||
| 301 | ATTGCAAGTG | GCCGTGTGAC | GGAAATGTAT | CGTGGGGCCC | TACTCGTATA | TGACTGCAAT | 360 | |||||||||
| 361 | CCAGGCTACA | CATTAACGGG | AGATTCTTCA | ATTCATTGTG | ATGGACGACG | GTGGAACGCG | 420 | |||||||||
| 421 | ACACCTCCAG | TCTGTGGGAT | CAATCCAGAT | GTAGTTCAAG | ACACCCATTG | TGATTTTGAG | 480 | |||||||||
| 481 | AGTCCTCATT | TGTGCGGCTG | GAGCCACGAT | CCGACTCATG | ACTTTGACTG | GAGGCGAAAC | 540 | |||||||||
| 541 | CAGTTTTCAA | CTCCGTCTGG | ACACGTTGGA | ACAGGACCTT | CTCATGACCA | CACATTTGGA | 600 | |||||||||
| 601 | GAAAACAAAG | CAGGGTATTA | TATCTACATA | GAGGCATCCT | CACCCCGAAA | AATAAATGAT | 660 | |||||||||
| 661 | ACGGCACGTT | TATTTTCTCC | TGTGTACCCT | CCAGATGAAA | GCGGTGGTTG | TTTTCTTTTC | 720 | |||||||||
| 721 | TGGTATCACA | TGTATGGTGC | AACTACAGGA | GGCATTCGTG | TCTACTTCAA | ACCTGAAAGC | 780 | |||||||||
| 781 | CACGTATTTG | GAGAACTTTC | TCCAAAATGG | GAAAAATTCG | GAGCTCAAGG | TAACCAGTGG | 840 | |||||||||
| 841 | TTACGAGGAA | ATATGTCTAT | ACCTACTGTT | AATGAAAACT | TTCAAATTGT | TATAGAAGGC | 900 | |||||||||
| 901 | ATACGAGGAG | ACGGGTATGT | TGGAGACTCA | GCTATAGACG | ACATTGAACT | CACGAAGTCT | 960 | |||||||||
| 961 | GATTGCCAAA | GCATAAACGA | TACAGTTGAA | ACTAATTCAG | AAGATGTAGA | TTCGAACTCA | 1020 | |||||||||
| 1021 | TGCAGAGGAA | GGTGTAGAAC | ATCCAATGCA | AATGACTCTT | GTGAATGCAA | AGTTAGTTGT | 1080 | |||||||||
| 1081 | ATGGCAGCAG | GCAGTTGTTG | CAGTGACTAC | GTTACTTTGT | GCTCTGGAGG | CAACGATGAC | 1140 | |||||||||
| 1141 | TTAGAACAGA | ATACAAATGA | ATCCGAACCT | GGTGATTTTT | ATGCCACAAC | AACTAGTCCA | 1200 | |||||||||
| 1201 | TTGACAGTAA | CATTAACTGC | AGGGACTCCA | CTGACAGTAA | CATTAACTAC | AGATGTTCAA | 1260 | |||||||||
| 1261 | ACATCAGTTT | CCTCTTCAAG | TCCTTCATCG | CAGTTCACTA | ATCAGCCTTT | AACGGAAACT | 1320 | |||||||||
| 1321 | CCTCTCAAAA | CATTTGTTCC | CATGACAAGT | TCTACAGCTG | CAGCAACAAC | TGAAGCAATT | 1380 | |||||||||
| 1381 | TCTTCGCCAT | CGACATTTTC | ATCCACTGTT | CCTATTACTG | ATGCAACTGG | AAGTTCGTCA | 1440 | |||||||||
| 1441 | ATAGTTACAA | CAATCATACC | GGAGCAACAA | ACCATGATCA | ATGTTATTCC | ACAAACAAGC | 1500 | |||||||||
| 1501 | ACATCGGCTA | CAGTTCCTAA | CTCCTCTCCT | AACTTGGGCA | CAAGAATTTT | AGACACAGCA | 1560 | |||||||||
| 1561 | CTGAAAACAA | ATGATAAAGG | AGCGACATCT | TCACCAACAA | ATCCTGTTAA | AACATCTTCC | 1620 | |||||||||
| 1621 | AGCACAAAAA | CTACAGTGAT | GCCAAGCTCT | AGATCTACGG | ATAAACGAAC | TACTGCTCCA | 1680 | |||||||||
| 1681 | AATCAAACAT | TTCCTTTGCA | AACGAATTTG | GGAACTAATA | CTCAACTAAC | CACAACTACA | 1740 | |||||||||
| 1741 | ATTACTCCTC | AAACAACTAC | AACTACTACT | ACTCAGCCAA | CCACAACTTC | AACGACTACC | 1800 | |||||||||
| 1801 | CAACGAATCA | CAACTTTACC | TACTACGCGA | CGAACCACCA | CTTCTACTAC | TATTCAACCA | 1860 | |||||||||
| 1861 | ACCCCAACTT | CAACTACTAC | TCGACAAACC | ACGACTTCTA | CTACTATGCA | ACCAACTCCA | 1920 | |||||||||
| 1921 | ACTTCTACTA | CTACTCAAAC | AAACTCAACT | TTTACTGCTG | TTAGCACTCA | ACCACGCACA | 1980 | |||||||||
| 1981 | ACTAGTACAA | ACACTATTCC | ATCGTCTACA | ACTATTATTC | CGGTATCAAC | AATATCCATT | 2040 | |||||||||
| 2041 | AGAGTGGACT | CTAATATTTC | AAACCCTACT | TCAGATTTAG | TTACTCACGC | CGAGCCAACT | 2100 | |||||||||
| 2101 | TCATCTTCAA | TTTTAACAAC | AAATGTTCCC | ACATCTGTAT | CAACAATCGG | TATTCCATAT | 2160 | |||||||||
| 2161 | ATAACCACAC | CAAGGTACAA | TCTGAGGCCA | AGGAAATCGA | CCACCACTTC | CACATCGACA | 2220 | |||||||||
| 2221 | GAAACATATT | CAACAACACG | TTATTCTTCC | ACGACCAAAA | AATCAATATT | CATTTCAAGG | 2280 | |||||||||
| 2281 | ACAGCACTTC | CACTATCTAA | TACTGAAACA | TCAACCATTT | CATCAGCAAA | AAGCATCATT | 2340 | |||||||||
| 2341 | TTAACATCTA | CTATAAAAAG | CACTGTAAAA | ACATCGATGA | CGTCTAACCC | TATAAGGAAA | 2400 | |||||||||
| 2401 | TTAGCGAGTA | CCCGAAGTAT | GTCAGAAAAA | AATAAATACT | CAAATCACAT | GCCTAGTCCT | 2460 | |||||||||
| 2461 | ACTACTACAG | CAAATCTATC | ATCATTTCGT | ACCACGTCGG | ACTCTTACGA | AGTGGTTGCA | 2520 | |||||||||
| 2521 | TCAAAAGCAG | ACGAACCAAA | CAGTAATAAG | AGTTCGGTGA | TTACCGTATG | TGTAGTAGTA | 2580 | |||||||||
| 2581 | GTAATTGCTG | TAATATGCAT | AGCTGGAGGC | GTTGCATTTT | ACCTTCGAAA | ATACAGACAT | 2640 | |||||||||
| 2641 | AAAAGACGAT | CGAATCTGGA | TGATGATTCC | GAATTGCGAT | TTTTGCCAGA | AAGTGACTAT | 2700 | |||||||||
| 2701 | ATGGAATACT | CAGATCCATC | AAATTTGGAC | AAAATTCTAG | AATAT | 2745 | ||||||||||
| Single Nucleotide Polymorphisms | ||||
| 159 | T= 0.57 | C= 0.43 | ||
| 1470 | A= 0.54 | G= 0.46 | ||
| 1648 | T= 0.84 | A= 0.16 | ||
| 1675 | G= 0.88 | A= 0.13 | ||
| 1696 | T= 0.86 | C= 0.14 | ||
| 1747 | C= 0.64 | T= 0.36 | ||
| 2023 | G= 0.71 | T= 0.29 | ||
| 2024 | T= 0.71 | C= 0.29 | ||
| 2025 | A= 0.73 | T= 0.27 | ||
| 2033 | T= 0.73 | C= 0.27 | ||
| 2175 | G= 0.55 | A= 0.45 | ||
| 2326 | G= 0.58 | A= 0.42 | ||
| 2383 | T= 0.56 | A= 0.44 | ||
| 2471 | C= 0.58 | T= 0.42 | ||
| 2566 | G= 0.50 | A= 0.50 | ||