| CSH_0272_Complete Single nucleotide polymorphisms | ||||||||||||||||
| 1 | ATGGATGACC | GGACGTGGTC | AGCCGGGAGT | CTGCGCCTGG | TGCCTTACAC | CCGGGAGTCC | 60 | |||||||||
| 61 | CTGGCCCGCC | AGGAGGACCG | GTTTCGCTCG | GCCGAGGCGC | GGCGGGGCGA | GCACGGCATC | 120 | |||||||||
| 121 | AGGCGCGAGA | GGGGCGCCAA | CCTGCCGGAG | TGCGAATGCG | TGTGCATCGC | GCCAGACCTG | 180 | |||||||||
| 181 | TTGCCAAAGG | AGATATTCTA | CACGCCGCTG | GAAGACGTCG | GGCAGTTCGG | GCTGGACAAG | 240 | |||||||||
| 241 | ACTTTCTGCG | TGATAGCCAA | ACGGTCTTCC | AGTTACTACT | TGTACCGCTA | CTCTGCAGAA | 300 | |||||||||
| 301 | GATTCCTTGT | TCCTCTTTAG | CCCCTGGTCG | ACAGTCAGGA | AGTTTGCCAT | CAGACTCTCG | 360 | |||||||||
| 361 | TGCCACAGGT | ACTTCGAGTT | GTTTGTGATG | ACTACAATCC | TGTTGAACTG | CGTCTTCCTA | 420 | |||||||||
| 421 | GCGTTATCAC | AACCTATTGA | AGAAACTGAG | TACGTGTTCC | TCGTCATATA | TACGATTGAG | 480 | |||||||||
| 481 | ATGATCATCA | AGATGATCGC | CAAAGGATTC | ATTTTAGACA | AATACTCGTA | CCTAAGGAAT | 540 | |||||||||
| 541 | CCTTGGAACT | GGCTAGATTT | CATCGTGGTA | CTGTCGGGGT | ACATCACCTT | GAGCTTACAA | 600 | |||||||||
| 601 | GCCATCGGAG | TTGCCATCGG | AAATCTGTCC | GGACTGCGCA | CATTCAGAGT | TCTGAGAGCC | 660 | |||||||||
| 661 | CTCAAAACAG | TCTCCATCAC | GCCGGGTCTG | AAGACAATCG | TGAATGCCAT | GCTGCATTCT | 720 | |||||||||
| 721 | CTCGGAATGC | TAGCGGAGGT | GATGACTTTG | ACCGTGTTCT | GCCTCATGGT | TTTTGCATTA | 780 | |||||||||
| 781 | CTGGCGTTAC | AGTTGTATGT | TGGCGTTCTG | CGGCACAAGT | GTGTTCTCAA | CATGCCATCG | 840 | |||||||||
| 841 | CAGAACGTCT | CTCACAAGAG | CTACTCGCTG | CACGTGAATA | ACAATTCCAT | GTGGCTCCTC | 900 | |||||||||
| 901 | GATTCCGACG | GCCAACCGAC | AGTCTGCGGG | AACAAGTCGG | GAGCAAGGAG | GTGTCCAGAA | 960 | |||||||||
| 961 | GGCTACACGT | GCTTACCTGG | GATCGGCGAA | AATCCAAATT | TCGGCTATAC | CAGCTTTGAC | 1020 | |||||||||
| 1021 | AGCTACGGTT | GGGCTCTGCT | CACTACATTT | CAGCTCATCA | CTTTGGACTT | CTGGGAAGAT | 1080 | |||||||||
| 1081 | GTCTACAACA | AGGTCAACGC | CACCACGGGA | CCAACCAGTG | TGTTCTTCTT | CATGCTGGTC | 1140 | |||||||||
| 1141 | GTGTTCTTCG | GTTCATTTTA | TCTCATCAAC | TTGACATTAG | CCGTCGTTGC | CATCGCCTAC | 1200 | |||||||||
| 1201 | GAGGAGGAAG | CTGCCACAAC | GTTAAGGGAG | CAAGATAAAA | TCAAGAGGTT | CACAGTCGGC | 1260 | |||||||||
| 1261 | CTCCCGACAC | GGATCTATTC | GACTCTGTTG | GCCCTGAAGG | CACAGACCGC | GATGTTCAGG | 1320 | |||||||||
| 1321 | CCCGCTTTCC | AGCGAAGATC | TCGCCAGCCG | CAGAGGTGGT | GCAGCCCTAG | AAGAGGAGCG | 1380 | |||||||||
| 1381 | AATGTCGCCC | CGAGAACTCC | CCCCATCAGG | ATCCAAGTTC | CAAGGAGCGA | CAACATTTGC | 1440 | |||||||||
| 1441 | GCAACTACGC | ACACGCCGTT | CAGAAATTCG | GGGCGCCCCT | TTACGCCTGG | AGAGACCTTG | 1500 | |||||||||
| 1501 | TACGAGGAGG | ATGAAGACGA | TGAGGAACAA | CAAATCAGGA | GGACGAGACA | ATGCATTGGA | 1560 | |||||||||
| 1561 | GAGGCACCTG | ACATCGTCGT | GAGCACAGGT | GGACAATTGC | CTGCCATAGG | GAGAGTCGTC | 1620 | |||||||||
| 1621 | AGGGGACGTT | CCTCGGCTCC | AAGGAGAACG | GTGCACGTGT | TCGACGACAC | TCTGCGCAGG | 1680 | |||||||||
| 1681 | CCATCGAGTG | ATCCAAGTCT | GACCGTTTCG | TGGTGCAGGA | TGCGCATTGG | GGTGTGTTAC | 1740 | |||||||||
| 1741 | AGCAACTGCA | ACCGAATGTT | CCAGCTGGCT | TTCGAGTTCC | TCGTCAGAAT | AAGGCGATAC | 1800 | |||||||||
| 1801 | CTGGCAGTGA | TAGTGAGCGA | CCCCCTCTTC | GATATGATGA | TCACCGTGTG | CATCTTGATC | 1860 | |||||||||
| 1861 | AACACCGCGT | TTCTCTCCTT | CGAACACCAC | GGCATGACGG | CCAAAACGGA | GAGAACCCTC | 1920 | |||||||||
| 1921 | AGGCTCGGCA | ATCTCGTATT | CACAATCATC | TTCTCGCTGG | AGGCTGCCGT | GAAAATGCTG | 1980 | |||||||||
| 1981 | GCTTTGGGGC | GCGACTACTT | CAAAAGCAAG | TGGAACGTGT | TTGACCTCGT | CGTGGTGCTC | 2040 | |||||||||
| 2041 | TTGAGTCTGG | CAGACCTCAG | CTTCGAAACG | GTCGGAGGAC | TCTCTGTTCT | CAGAACCTTC | 2100 | |||||||||
| 2101 | CGGCTGCTTC | GAGTGGTGAA | GTTGGCCCAG | GCCTGGCCGA | CGATGCGTCT | GCTGCTGACC | 2160 | |||||||||
| 2161 | ATCATCGCCA | GCACCCTGGG | TGCGGTGGGG | AACATGACTC | TGGTGCTCGC | CGTCATCGTC | 2220 | |||||||||
| 2221 | TACATATTTG | CCATCATGGG | GGTGCAGCTG | TTTCAGGACA | TCTACTCCGA | ACAGAACTTC | 2280 | |||||||||
| 2281 | GCACCAGCTC | CCGTTCCCAG | GTGGAACTTC | ACCGACTTCT | GGCACTCGCT | GCTCATGATG | 2340 | |||||||||
| 2341 | TTCCGCATTC | TGTGCGGCGA | GTGGGTGCAG | CCACTGTGGG | ACTGTATGCG | GGCGGCGGGT | 2400 | |||||||||
| 2401 | GAGAGGTATC | ACGTGTGCAT | CATCCTGTTT | CTCGTTGCCC | TGACGGTCGG | CAATTTCCTC | 2460 | |||||||||
| 2461 | GTGCTGAACC | TCTTCCTGGC | GATGTTGCTC | AATTCCTTCA | ACACGCAAGA | ACTGCAGGAG | 2520 | |||||||||
| 2521 | AAGAAGGAGA | AAGGTGGAGC | CGATTCCAAA | ATCCTGAAAG | GATTCCAGAG | GATTCGGGGA | 2580 | |||||||||
| 2581 | GTCATAAGTC | GTAACAACGG | GACGCAGCGA | TCCAATTTCG | AGGGCTCGCT | CCCCTCGAAG | 2640 | |||||||||
| 2641 | GAGCCAACTC | GTGAAGCCCT | GTTTCAAAAG | AGGCGTAGGT | GGTCGGAGCC | GGGACTAGCG | 2700 | |||||||||
| 2701 | CAGCACCCCG | TCTCGCCCAG | GAGAGCCAGT | GACATATCCA | TCAGCGTCTG | CGACAAGTTC | 2760 | |||||||||
| 2761 | AGATGCGCCA | GAGACGCTCC | CGGGACGCTG | AGTAATTACA | CTTCAGCGAG | AATTTTAGCT | 2820 | |||||||||
| 2821 | TCTGCGAACA | AGAACACGGC | CAACCACTTA | CCACCAGTTG | AAACAGTAGA | AGAGGAACCC | 2880 | |||||||||
| 2881 | CAAAACGGCA | CAAGAGAATC | CAGTCCATTG | AAGTCCTCGG | ACAACGAGAG | CGAGATCAAG | 2940 | |||||||||
| 2941 | GAACCTCCAG | AATGCTGCCC | GTCCTGCATC | TACAGGCATT | TCGATACTGA | GGGTAGACCG | 3000 | |||||||||
| 3001 | TTCTTCCGGT | ACTGGGCCCG | TACACGAAGA | ATTGTACTGG | CCATAGTGGA | TCACCGAGCT | 3060 | |||||||||
| 3061 | TTCGAATGGG | CTGTCCTCAT | ACTTATATTC | TGCAGCAGTA | TAGTCTTGTG | TTTTGAGGAT | 3120 | |||||||||
| 3121 | GTTTTCCTCC | CGGAGAAGCC | AATCATGCTG | ATGGTTTTAG | GCTATTTCAA | TCTATTCTTC | 3180 | |||||||||
| 3181 | ACGACCTGCT | TCGTTTTGGA | AGTCCTCCTG | AAGTGGATAG | CTTACGGATT | CATCGTTTAC | 3240 | |||||||||
| 3241 | TTCAGCAGTT | TGTGGACCAC | CATGGATTTT | ATAATTGTTT | GCGTATCAGT | TGTAAGTATA | 3300 | |||||||||
| 3301 | GTAGCAGAAA | GTTCTGGAAG | TGGGCTCTAT | GTACTCCGAG | CCTTCAGAAC | TCTTCGAGCC | 3360 | |||||||||
| 3361 | CTTCGACCAT | TAAGAGCTAT | ATCCAGGTGG | CAAGGGATGA | AGATCGTCGT | CAACGCTCTG | 3420 | |||||||||
| 3421 | ATGTCCGCCA | TCCCCTCGAT | CTTCAACGTC | CTGCTGGTGT | GCCTGGTGTT | CTGGCTCATC | 3480 | |||||||||
| 3481 | TTCGGCATCA | TGGGCGTGCA | GTTCTTCGGC | GGCCGGTTCT | ACAGGTGCGT | GGACGACACG | 3540 | |||||||||
| 3541 | GGACGCACCC | TGCCCGTGGA | GCTGACGGCG | GACGTGACCC | AGTGCCTGAG | TCTCAACTAC | 3600 | |||||||||
| 3601 | TCGTGGGTCA | ACAGGGACAT | CAATTTCGAC | AACGTGGGAA | ACGCCTACTT | GGCGCTGTTC | 3660 | |||||||||
| 3661 | CAAGTGGCCA | CGTTCGAAGG | GTGGACGGAA | GTGATGGAAT | ACGCCAGCGA | CGCGACCGGC | 3720 | |||||||||
| 3721 | GTGGGCTGCC | AGCCACGTAC | AGAAGCCAAC | CTGCCCGCCC | TCATTTACTT | CGTCGTCTTC | 3780 | |||||||||
| 3781 | ATCATTTGCG | GATCTTTCTT | CACCCTCAAC | CTCTTCATCG | GCGTCATCAT | TGATAACTTC | 3840 | |||||||||
| 3841 | AACATGTTAA | AGAAGCGGTA | CGAAGGCGGC | ATCGTGGAAA | TGTTCCTGAC | GGACAGTCAA | 3900 | |||||||||
| 3901 | CGTGCGTACT | ACACGGCGAT | GCTGAAACTA | GGAAGGAGGA | AACCGCAGAG | AATCGTGAAG | 3960 | |||||||||
| 3961 | AGGCCTCAAA | ATAGATACCT | CAGGCTGTGC | TACGACGTGG | CGATGAGCAG | AAGATTCGAA | 4020 | |||||||||
| 4021 | ATGGTTGTCT | TCATCCTGAT | CGTCTTGAAC | ATGATCGCCA | TGACAGTGGA | ACATTACCAG | 4080 | |||||||||
| 4081 | CAGCCCGAAG | AGATCACCTC | CGTCCTCGAG | ACTCTGAACA | TCGTCTTCAC | AGCTATCTTT | 4140 | |||||||||
| 4141 | GGGGTGGAAG | CCGTCGTCAA | AATCATTGGG | CTGAGACAGT | ACTACTTCAC | GTTCCCGTGG | 4200 | |||||||||
| 4201 | AATGTTTTCG | ACCTCACCGT | CATCGTCATG | TCAGTCATTG | GCATCATCTT | CGAGGAGGCA | 4260 | |||||||||
| 4261 | CTCCAGTCTC | TGGTCATCAG | TCCCACGCTG | CTGCGGGTGA | TCCGCCTCAT | CCGGATCGGC | 4320 | |||||||||
| 4321 | CGCATCCTGA | GGCTCATCAA | GGGCGCCAAG | GGCATCCGGA | AGCTGCTCTT | CGCCCTCGTC | 4380 | |||||||||
| 4381 | ATATCGCTGC | CGGCGCTCTT | CAACATCGGG | GCGCTTCTCT | TCCTCGTCAC | CTTCGTCTAC | 4440 | |||||||||
| 4441 | GCCATCGTCG | GGATGTCGCT | CTTCGGGCAC | GTCAAGGTGG | CGGACCTCGC | GTCGGGCGGC | 4500 | |||||||||
| 4501 | GGCGGGGGAG | GCCTCTCGGA | GATGGTCAAC | TTCCAGACTT | TCGCCAACAG | CATGGTGCTG | 4560 | |||||||||
| 4561 | CTGTTCCGGC | TGGCCACGTC | GGCGGGCTGG | AACGACGTGC | TGGACACCCT | CATGCTGCAG | 4620 | |||||||||
| 4621 | CCCCCGGACT | GCGACGCGGC | CTACAGGGGG | CTGCCGAACG | GAAACTGCGG | GCACCCGACC | 4680 | |||||||||
| 4681 | GTCGCCGTCG | TCTACCTCGT | GACATACATC | ATCATCAACT | TCATGGTGAT | CATCAACATG | 4740 | |||||||||
| 4741 | TACATCGCCG | TCATCCTCGA | GAACCTCAGC | CAGGCCAGCA | AGGAGGACAC | GGGCGTGTCC | 4800 | |||||||||
| 4801 | GAAGAGGACA | TCGAGATGTT | CTACGTGTGC | TGGTCGCGGT | TCGACCCCAA | CGCCACCCAG | 4860 | |||||||||
| 4861 | TTCATTCGCC | ACGACCAGCT | GTCGGAGTTC | GTGGCCTCGC | TCGACCCCCC | GCTCGGCATC | 4920 | |||||||||
| 4921 | GAGAGGCCCA | ACGAGCCGGC | GCTCGTGGCC | ATGAACATCC | CGATAGCGAC | GGGCGACAGG | 4980 | |||||||||
| 4981 | ATCCACTGCC | TGGACATCCT | GCACAGCCTC | GTCAACCTGG | TCCTCGGAGA | CGTCGAGGAC | 5040 | |||||||||
| 5041 | ACGGAGGAGT | TCCGCATCAT | CCAGCGGCAG | GTGGACCAGA | GGTTTCGCAA | GACCTTCCCC | 5100 | |||||||||
| 5101 | ACGCGGAACC | TGGTGGAGAT | CGTCTCCACC | ACCCTCAAGC | GCAAACAACA | GGACAACGCT | 5160 | |||||||||
| 5161 | GCCAAAGTCA | TCCAGAGGAC | GTACAAGAGG | CACCGCAGCC | GGTTACGGGG | AGACGAGAAC | 5220 | |||||||||
| 5221 | TGC | 5223 | ||||||||||||||
| Single Nucleotide Polymorphisms | ||||
| 171 | G= 0.79 | T= 0.21 | ||
| 423 | G= 0.76 | A= 0.24 | ||
| 1302 | A= 0.75 | G= 0.25 | ||
| 1311 | G= 0.74 | A= 0.26 | ||
| 1510 | G= 0.81 | A= 0.19 | ||
| 1590 | T= 0.82 | A= 0.18 | ||
| 1978 | C= 0.61 | T= 0.39 | ||
| 2575 | C= 0.75 | A= 0.25 | ||
| 3417 | T= 0.56 | C= 0.44 | ||
| 3477 | C= 0.72 | T= 0.28 | ||
| 4155 | C= 0.66 | T= 0.34 | ||
| 4891 | G= 0.54 | A= 0.46 | ||
| 5191 | C= 0.88 | A= 0.13 | ||