CSH_0387_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGGCGGCGA | AGACATATGG | TGTGGATGAT | TTAGTTCGAA | GTGTGACTTT | ATATAATTCA | 60 | |||||||||
61 | TCACCATTGC | TATTTCATGG | TTATGTGGGA | CCTTTCGTCA | TTTTATATTC | AATTTGGTTT | 120 | |||||||||
121 | TATGTATGGG | CTTTTACTTA | TGGAGTTTCA | GAGTATTTTG | AAGCCGGCAT | GATAGTAGTA | 180 | |||||||||
181 | GCTTGTATAG | GAATTCTACA | AATTCTTACT | TGTTTATTTT | GCCATTGGTC | CGTACATATA | 240 | |||||||||
241 | AGATGCTTGT | TATCTTGTAG | ACGAGAAAAA | AAAGTACTGA | ATGCTTGTTA | TGTTAAAGTT | 300 | |||||||||
301 | GTTCCTACAC | CAAATAATGG | TTCTCCAGAA | CTGGTTCGAC | TTCATAAGAC | TAAAGAAAAA | 360 | |||||||||
361 | GGAAGCAATA | ATATTGATGT | CTGGTTTAAA | TTTCAAAAGA | CAAAATATAT | TTACAATTTT | 420 | |||||||||
421 | GAGGAGAAGC | GTTTTGAAGG | TTTGCAGTTT | CCAGATAATC | ATTCTTTCAA | ATTCTACCAA | 480 | |||||||||
481 | GAATGGAAAG | GCTTTGCTGA | TGAGGCTGAA | TTAACAAATG | CTGAAAATAA | ATATGGGAAG | 540 | |||||||||
541 | AACGAACTGG | AAATGGTTGT | ACCTGAATTC | ATGGAACTTT | TCAAGGAGAG | GGCAACTGCA | 600 | |||||||||
601 | CCATTTTTTG | TATTCCAAGT | ATTCTGTGTT | GGTCTGTGGT | GTTTGGATGA | ATATTGGTAT | 660 | |||||||||
661 | TACAGTGTTT | TTACCTTGTT | TATGCTGATA | GCATTTGAAT | GTACGCTTGT | ATATCAGCAG | 720 | |||||||||
721 | CTTCGAAATT | TATCAGAAAT | AAGGAAAATG | GGAAATATGC | CTTATCCAAT | TTTAGCTTAC | 780 | |||||||||
781 | AGAAACCGAA | AGTGGAGGTT | TATACCAAGT | TGTGATTTAG | TACCAGGCGA | TATTGTTTCA | 840 | |||||||||
841 | ATAGGTAGGT | CTCAACATGA | TAATTTGGTT | CCATGTGATT | TAGTTTTGCT | TAGAGGTCCT | 900 | |||||||||
901 | TGCATTGTTG | ATGAATCTAT | GTTAACTGGA | GAATCAGTTC | CTCAAATGAA | GGAACCTGTT | 960 | |||||||||
961 | GAAGAATTAG | ATCCAAGTGA | TTTTTTGGAT | CTAGATCAGC | ATGGCCGCTT | ACATATATTG | 1020 | |||||||||
1021 | TATGGGGGAA | CCAAAGTTTT | GCAGCACACA | CCTCCTGGGA | AAAATAGTCC | AGGACTGAAA | 1080 | |||||||||
1081 | CCTGTCGACA | GTGGCTGTGT | TGCATATGTC | TTGAGAACTG | GTTTCAATAC | ATCACAAGGC | 1140 | |||||||||
1141 | AAACTTCTGC | GAACCATTTT | GTTTGGTGTC | AAGCGTGTTA | CTGCTAATAA | TCGTGAAACA | 1200 | |||||||||
1201 | TTCTGTTTCA | TCCTTTTCCT | ATTGGTTTTT | GCAATTGCTG | CTTCTGCATA | TGTATGGATT | 1260 | |||||||||
1261 | AAAGGAACTG | AAGATCCAAA | ACGTAACAGG | TATAAACTGT | TCCTTGAATG | TGCACTCATA | 1320 | |||||||||
1321 | ATAACTTCTG | TTGTGCCACC | TGAGCTACCT | ATTGAGCTTT | CACTTGCTGT | CAACACCTCA | 1380 | |||||||||
1381 | CTCTTGGCAT | TATCTAAATT | ATATGTTTAT | TGCACAGAAC | CATTCCGAAT | ACCTTTTGCT | 1440 | |||||||||
1441 | GGGAAAGTTG | AAATTTGTTG | TTTTGATAAG | ACTGGCACTC | TCACCAGTGA | TAATTTAGTT | 1500 | |||||||||
1501 | GTAGAAGGTG | TTGCTGGTTT | GAAGGATAAA | AAAGATGTAT | GTGCCATAAG | TGACATTCCA | 1560 | |||||||||
1561 | CCAGACAGTA | TACAGGTTCT | TGCCACTTGT | CATTCTCTTG | TCCAGCTTGA | TGATGGCATT | 1620 | |||||||||
1621 | GTTGGTGATC | CCTTGGAGAA | GGCCACATTA | ACAGCAGTAG | AATGGAATCT | TACCAAAGGT | 1680 | |||||||||
1681 | GATGCTGTGG | TGCCACGCAA | AGGAAAGATG | CCTGGTTTAA | AAATATTTCA | TAGATTCCAC | 1740 | |||||||||
1741 | TTTTCTAGTA | GTTTGAAAAG | GATGTCTGTC | ATTGCTGGTT | ATAATAATCC | TGGTTCTTCA | 1800 | |||||||||
1801 | GATACTTGCT | ACATAGCAGC | TGTGAAAGGA | GCTCCTGAAA | TTCTGAAAAC | CATGTTTAAA | 1860 | |||||||||
1861 | AATCCTCCAT | CCAACTATGA | TGAAACTTAT | ACTGAGATGG | CAAGACGTGG | AGCTCGTGTC | 1920 | |||||||||
1921 | TTAGCTTTAG | GGAGGAGAGA | ACTGGGAATA | TTATCTCATC | AAGAGGTCCG | TAATTTGACC | 1980 | |||||||||
1981 | AGAGAGGATA | TTGAAAAAGA | ACTTACTTTT | GCTGGTTTTG | TTATTATATC | TTGCCCTCTT | 2040 | |||||||||
2041 | AAATCAGACT | CAAAAGCTGT | TATCAAAGAA | ATACTAGCTG | CCAGCCATCA | TGTAGTGATG | 2100 | |||||||||
2101 | ATAACTGGTG | ATGCACCCTT | AACTGCATGT | CATGTTGCGA | GAGAGCTGAA | TTTCACTAAA | 2160 | |||||||||
2161 | CATAACATGA | CTCTAATTTT | AACCCCTCCT | GATTCTAAAT | CAGGAGATGA | GTGGAACTGG | 2220 | |||||||||
2221 | ATATCAATCG | ATGAAAGTGT | ACTTTTACCT | GACATTCCAA | ATAAACATGC | TGATAAATTA | 2280 | |||||||||
2281 | TATAAACAAT | ATGACTTGTG | TCTCACTGGA | GAAGGTATGG | CATATTTGAG | CTCAAAGAAT | 2340 | |||||||||
2341 | CCAGAATTTT | TAAGAAACCT | CCTTCCCCAT | ATTCGTATTT | TTGCTAGAGT | TGCACCCAAG | 2400 | |||||||||
2401 | CAAAAGGAAG | CTGTTGTCAC | TGAACTTAAG | AGCTTGGGCT | ATGTGACTTT | GATGTGTGGT | 2460 | |||||||||
2461 | GATGGAACAA | ATGACGTTGG | TGCCCTAAAA | CATGCTCATG | TGGGTGTAGC | TATTTTGTCC | 2520 | |||||||||
2521 | AATGCACCAC | AACGAATTCC | AGGCAGACCC | AGACGTCCAA | AGGAAGAAGA | TCCAGAGAAG | 2580 | |||||||||
2581 | GATAATATGG | TTAATGATGC | TATGTCGAAA | CTTGAAACAA | TGGCATCAAA | AGGGAAAGTA | 2640 | |||||||||
2641 | GCTAGAAGAT | CAGAAAATAA | AAACAAAGTC | CCTACCAAAG | CTGATAGTTT | TACAGAAACA | 2700 | |||||||||
2701 | CAGAAAAGAC | TTCAGAAATT | GCTAAAAGAA | ATGGAAGAAC | AAGACCCTGC | ACAAATTGTG | 2760 | |||||||||
2761 | AAATTAGGAG | ATGCGAGTAT | TGCTGCCCCT | TTCACCTCAA | AATTATCATC | AATCCAGTGC | 2820 | |||||||||
2821 | ATATGCCACA | TCATCAAACA | AGGAAGGTGC | ACTCTAGTTA | CAACCCTACA | AATGTTTAAA | 2880 | |||||||||
2881 | ATTTTAGCCT | TAAATGCCTT | GATTTTAGCT | TACTGTCAAA | GTGTATTATA | TTTAGATGGG | 2940 | |||||||||
2941 | ATTAAATTTA | GTGATACCCA | AGCAACATTA | CAAGGTCTAC | TATTAGCTGG | GTGTTTTCTG | 3000 | |||||||||
3001 | TTTATTTCTA | GATCAAAGCC | TTTAAAGACT | CTTTCTAAAG | AACGTCCTCT | TCCGAACATT | 3060 | |||||||||
3061 | TTTAATGTTT | ATACCATTTT | GACCGTGCTG | CTACAATTTG | CAGTACATTT | TACAAGTCTA | 3120 | |||||||||
3121 | GTTTATCTTG | TAGAACAAGC | TACTGCAAGG | TCGCCTCCAA | GGACAGAACA | ATTTGCAGAC | 3180 | |||||||||
3181 | CTGGAGGCTG | AATTCAAACC | ATCTCTTCTG | AACAGTACAG | TTTACGTTAT | TTCAATGTCT | 3240 | |||||||||
3241 | CTTCAGTTAT | CTACATTTGC | TATTAATTAT | AGGGGACATC | CTTTTATGGC | CAGTTTATCT | 3300 | |||||||||
3301 | GAAAACAAGG | CATTACTGTA | CAGTATTCTA | TTATCTGCAG | TAGCTATATT | TATGCTTGTC | 3360 | |||||||||
3361 | ACTGGCACAT | CACCACAATT | AGCTGATGTG | TTTTCTATCG | TAGAATTTCC | TTATGAGTTC | 3420 | |||||||||
3421 | CAGAATGTTG | TTCTGATGAC | TTTGTTCACT | GATTTCTTTC | TTGCATTTGT | TGTGGATAGA | 3480 | |||||||||
3481 | GTATCTCTAT | ATTTGTTCGG | CCATGGAAAA | CTACGAGTTG | TT | 3522 |
Single Nucleotide Polymorphisms | ||||
279 | G= 0.87 | A= 0.13 | ||
324 | T= 0.75 | C= 0.25 | ||
547 | C= 0.81 | T= 0.17 | A= 0.02 | |
2607 | G= 0.67 | A= 0.33 | ||
3084 | C= 0.71 | G= 0.29 |