| CSH_0420_Complete Single nucleotide polymorphisms | ||||||||||||||||
| 1 | ATGGAAGGAT | TTATTAAGAA | AAGACATCAT | TCTCTCCGTG | CTGCAGGGAA | AAAATCCCTT | 60 | |||||||||
| 61 | CATTTCGGAC | GCAGATTTTC | AGTATGCTTC | GGGAAGCGGT | CTGGAGGAAG | CGGCCGGAGA | 120 | |||||||||
| 121 | GTCAATGAGT | GCCTCATCTT | GGAACCTTCA | GAGATGATCG | TAATTGACTA | TCCCGATGTC | 180 | |||||||||
| 181 | CAGTTGATGC | GTCCTGGCCA | AAGGCAGTCA | TGTACAACTA | TGAACTTAGA | GAAATTACTG | 240 | |||||||||
| 241 | GCCTTGGAAC | AGGAGGAAGT | GACGATAGCT | TTAGATACTC | GACAGAGATT | TCATTCTGAG | 300 | |||||||||
| 301 | GGCTGTGATG | ACAACTATAG | ACATCATCGC | TTACAGCTTC | CTCTGGAGTT | CCCGTCAATG | 360 | |||||||||
| 361 | CTCCATCGTG | GGGAAGCACT | GCTTAAGAGT | TCCAATCGAA | ACTCTCACAG | CAGCGATTCT | 420 | |||||||||
| 421 | TCATCAGCAT | ACTCGGGATC | AGACACAATG | CAGTCTGTAC | AGTCGTCATT | GGAAGACCAG | 480 | |||||||||
| 481 | GAGGTGGATC | TGTCTGGACT | TATTGAAAGC | ATTGTTGATT | CTGATGAAGA | GGAGGACTTA | 540 | |||||||||
| 541 | GCTGAATCTC | TAAATAGTCT | TACAGTTCGG | GATACAGTCA | GGGAGTGTTT | AGAAAAAGAT | 600 | |||||||||
| 601 | CCATGTGAGC | GAACAGAGGA | TGACATAGAA | GTGCTTTTAG | AATTTATGCA | GCATTTACCT | 660 | |||||||||
| 661 | GCATTTGCCA | ATATGACATT | AACCATCAGA | AGAGCATTAT | GTGCTGTCAT | GGTATTTGCA | 720 | |||||||||
| 721 | GTTGTGGAGA | AAGCTGGCAC | CATTGTGATG | AATGATGGGG | AAGAATTAGA | TTCCTGGTCA | 780 | |||||||||
| 781 | GTCATTGTTA | ATGGACATGT | TGAAGTTGAA | CAGCAAGATG | GAAGGATTGA | AGAACTGCAT | 840 | |||||||||
| 841 | TTGGGGGACA | GCTTTGGTAT | CACACCAACG | ACTGAAAAAA | TGTATCACCA | AGGTGTGATG | 900 | |||||||||
| 901 | CGAACTAAAG | TGGATGACTG | CCAATTTGTA | TGTATTGCAC | AGAGTGATTA | TTACAGAATT | 960 | |||||||||
| 961 | CTCCACCAAG | GAGAAGAAAA | CACACGAAAG | CATGAGGAAG | ATGGAGAAGT | TGTTCTAGTC | 1020 | |||||||||
| 1021 | ACTGAGCACA | GAGTACTTGA | TGGTGGAAGT | CGACGTGGTC | ATATTGTCAT | TCGAGGGACT | 1080 | |||||||||
| 1081 | GTGGAAAGGT | TAATGGCACA | TTTAGTTGAG | GATAATGCTT | TAGATCCTAG | CTATGTTGAG | 1140 | |||||||||
| 1141 | GATTTCTTAC | TAACATATCG | AACTTTTGTG | AAAAACCCAC | TTGTTGTGAC | AGAGAATCTT | 1200 | |||||||||
| 1201 | TTGAGTTGGT | TTTCTGATCC | TCATCTCAGG | GATAAAGTTA | CACGAGTTGT | ACTTCTGTGG | 1260 | |||||||||
| 1261 | GTTAACAACC | ATTTCACAGA | TTTTGAAACA | GATCCAGACA | TGATGGAATT | TCTTGAAAAG | 1320 | |||||||||
| 1321 | TTTGAAGCAT | GTTTGGAAAA | AGAAAATATG | CAGAGCCAGT | TGAGGCTTCT | GAATATAGCA | 1380 | |||||||||
| 1381 | TGTGCAACAA | AAGCTCGCAA | CCGAACTGTT | ACTCTTGCAA | GGTCTACCAG | AGATGAAGTT | 1440 | |||||||||
| 1441 | CTTCACTTCC | ACATTCTTGG | TGGGTATGAA | AGGGGATTTG | GTGTGTTTGT | TTCCAAAGTT | 1500 | |||||||||
| 1501 | GATAAAAGTT | CCAAAGCAGA | AGAAGTTGGC | TTGAAACGGG | GTGATCAAAT | TTTAGAAGTG | 1560 | |||||||||
| 1561 | AATGGGCAAA | GTTTTGAACA | CATGAGTCAT | GCACGTGCTC | TTGAAGTGCT | AAGAGGAACA | 1620 | |||||||||
| 1621 | ACACATCTCT | GCATTACAGT | GAGATCTAAT | TTATTAGGTT | TTAAAGAAAT | GTTGAATACT | 1680 | |||||||||
| 1681 | CCTGAAAATT | CACCTCGACC | AAGAAGTAGA | AAAGCTTCTG | AAATTGCTAG | ACTTCAACAT | 1740 | |||||||||
| 1741 | GACCCTCAAG | CGAGGTTATC | AACACACTTG | GATTGGGGGG | ATGTTGGTTT | CCCGATTGGT | 1800 | |||||||||
| 1801 | GTAAGTGGTT | TTCCCTTGGG | TGTGGTCCCT | CTCTTTCAGA | CACCACATTC | ACCGCCTATC | 1860 | |||||||||
| 1861 | AAAGCTGTTA | GGTCAAACAG | TAACAACAGT | GGGGATCTAA | AGAAAGAAGA | CAAGAAAGGA | 1920 | |||||||||
| 1921 | TTTATGACTC | TGGGTCATAG | GGCAAAGCTG | AAGAAGGCAC | TTGTAAAAAT | GATCATACCA | 1980 | |||||||||
| 1981 | AAGACTCTGA | ATCACGAATC | TCAGTTAAAT | AGTTCTGATG | ACAGCCTGTA | CTCCATCCAC | 2040 | |||||||||
| 2041 | AGTGGAAGTA | GTGGTGGTTC | TGGTGGGGTT | GGTGTGCGAA | CAGCCTCTCC | TCATCGGACT | 2100 | |||||||||
| 2101 | GCTGGTGGAA | CCCTTTATCA | TAGCCACAGT | AATCCTGACC | TTTCTTCATT | AACTGCCTTA | 2160 | |||||||||
| 2161 | ACTGAGCAAC | CCCTGTCTCT | GGACTACCCT | GAGCATGTCT | TAAAAGTTTA | TAAATCTGAT | 2220 | |||||||||
| 2221 | CAGACCTTTA | AGTTCCTCCT | TGTTCATAAA | GAAACAACTG | CTAGGGAAGT | TGTTATGTTA | 2280 | |||||||||
| 2281 | TCTTTAAGAG | AGTTTGGTAT | AACAGATCCC | AGTAGTAATT | ACTCCTTAAG | AGAAGTGTCT | 2340 | |||||||||
| 2341 | GTTGGAGATG | GTGGTGTTTT | GAAGCAACGC | AGGCTGCCAG | ACCAACTTCA | GAATCTAGCA | 2400 | |||||||||
| 2401 | GAAAGAATTG | GGCTCAATAG | CCGATATTAT | TTAAAAAACA | ATGCTTCTAC | TGAACCTCTT | 2460 | |||||||||
| 2461 | GTTCCTGATG | AATTAGCTAC | GGAGCTTCTT | CGTGAAAGTC | AAGTGCACTT | CTTGCAGTTA | 2520 | |||||||||
| 2521 | AATAGTGTGG | AAGTAGCCAC | ACAGCTTACA | CTAGAAGATT | TTAGTACATT | TAGACAAATA | 2580 | |||||||||
| 2581 | GAGCCAACAG | AATACATCGA | TGACTTGTTT | GAAGTGTCTT | CTAAGTATGG | AACTCCACAG | 2640 | |||||||||
| 2641 | CTGTCAAAGT | TCGCTGAATT | GGTGAACCAT | GAGATGTTTT | GGGTAGTCAC | TGAAGTGTGT | 2700 | |||||||||
| 2701 | GCTGAACATC | AACTAATTAG | AAGGATGAGA | ATCATCAAAC | AGTTTATAAA | AGTTGCAAGG | 2760 | |||||||||
| 2761 | CAGTGTAAGA | TCTGCAAGAA | TTTTAATTCT | ATGTTTGCCA | TATTAAGTGG | ATTGGGCCAT | 2820 | |||||||||
| 2821 | GGTGCTGTTT | CACGGCTAAG | AACAACATGG | GAGAAACTAC | CTTCCAAGTA | TCAAAAGATA | 2880 | |||||||||
| 2881 | TTTTCAGATT | TACAAGATCT | GATGGATCCT | TCAAGAAATA | TGTGTAAATA | TCGTAATCTC | 2940 | |||||||||
| 2941 | TTAAATAGTG | AGCACACACA | ACCTCCTATT | ATTCCATTTT | ACCCAGTTGT | AAAGAAAGAT | 3000 | |||||||||
| 3001 | CTGACATTCA | TACATCTCGG | AAATGATACA | TTTGTAGACA | ATTTGGTGAA | CTTTGAGAAA | 3060 | |||||||||
| 3061 | TTAAGAATGA | TAGCAAAGGA | AGTCCGACAA | CTTATGAATA | TGTGTTCTGC | CCCCTATGAC | 3120 | |||||||||
| 3121 | CTTTTTAACA | TGTTAGAAAT | TGGAGGTGCC | CACCCCACTG | CTGCCATGGC | TTCACTCAAC | 3180 | |||||||||
| 3181 | AGCTTTGTTA | CAACTACAAA | TGCAGCAACA | GTAAAGAAAC | GAAAGAAAAG | TGCTGCACAA | 3240 | |||||||||
| 3241 | CCAAATCCCA | AGAAAATGTT | TGAAGAGGCC | CAAATGGTTC | GCCGAGTGAA | AACATATCTT | 3300 | |||||||||
| 3301 | TCTAATCTGA | AAGTAATATC | AGATGAAGAA | AAGTTGAGAA | CTATGTCTCT | AGAATGTGAG | 3360 | |||||||||
| 3361 | CCCAATACTG | GACCTGTACC | CATGGTGATG | CCAGTTGCCC | CTCAAATGCA | ACCACCCAGG | 3420 | |||||||||
| 3421 | AAAAGGCATC | CATCACCATC | TTTGTCCACT | GCAAGTAGCA | CTAGTAGTAC | ATCAGAAGGA | 3480 | |||||||||
| 3481 | AAGAAATCTC | TCAATTCGGG | CCCAAAATTT | GGTGCAGACT | CTCCCCAAGC | TGTTCGCAAG | 3540 | |||||||||
| 3541 | CTCCTCGCTC | TCTCAGATCA | GAGTAAAGTG | CGTCCACATC | AGCCTCCTCG | TCATCACCAC | 3600 | |||||||||
| 3601 | TCCTTGTCTC | CATCACCGTC | TCCAAATGCG | ATACGCAGAA | AACATGATGG | CAGGCAGGGG | 3660 | |||||||||
| 3661 | CATGGCCGAT | CACACAGTGA | CACAGCTAAT | CCTTCTGTGC | TGCCAGTGGA | TCTGAGTGCT | 3720 | |||||||||
| 3721 | GAAAGCTCCA | GTGTGACTGC | TCTTAGCAAT | TTACCCTTAC | GGAAATCTCA | AACATCAGGA | 3780 | |||||||||
| 3781 | TCTGTTACAT | CAAGCGATAG | CAGCAGTACA | GGCAGCTATC | ACCACCACAC | TTTATATGAA | 3840 | |||||||||
| 3841 | ATCGATTCTG | GTCATGCTAC | AAGTATTGAC | AGCCACAGTA | GCAGTTCATT | AGGTTCTTCT | 3900 | |||||||||
| 3901 | AATTCACCAC | CACAGCAAAG | AAACCAACAC | ATGGTTTCAC | ACTCACCTCC | CATAATGCGC | 3960 | |||||||||
| 3961 | ATGCGATCTT | TTCCACACAT | GAGCATCATG | CCAACAATTC | CAGGATCACA | AGCTGTGCCA | 4020 | |||||||||
| 4021 | CATGCATCTC | ATGTTCTCCC | ACCGCCACCT | CCCCCTAGAA | GTGCACCACC | CCCACCTTAT | 4080 | |||||||||
| 4081 | CCAAGGTCTC | AGCGACCTCC | TGATTATACT | ATTGCAGCCC | AAATGGCAGC | CCGAAGTCGG | 4140 | |||||||||
| 4141 | CAGATGGTTC | TGGGACGTGC | CCACAGCATT | GAAGGTGCCA | CTAGTTACTA | CGAAGACATT | 4200 | |||||||||
| 4201 | ACAGATCCTG | ATGATGATGA | TGATGAAACC | CAAGTATCCG | CAGTG | 4245 | ||||||||||
| Single Nucleotide Polymorphisms | ||||
| 282 | A= 0.58 | G= 0.42 | ||
| 3072 | A= 0.78 | T= 0.22 | ||
| 3597 | C= 0.52 | T= 0.48 | ||
| 3630 | G= 0.54 | A= 0.46 | ||
| 4167 | C= 0.70 | T= 0.30 | ||