CSH_0424_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGACATCTG | TTAAAGTGGC | AGTAAGGGTT | CGCCCTTTCA | ATAACAGAGA | GATTCATCGT | 60 | |||||||||
61 | GATTGTAAAT | GTATTATTTC | TATGGCAGGA | AATACTACAT | CCATTCTCAA | TCCTAAAGCT | 120 | |||||||||
121 | CCAGCTAATA | CAAAAGATGC | TACAAAAAGT | TTTAATTATG | ATTATTCATA | TTTATCTCTT | 180 | |||||||||
181 | GATCCCACTG | ACCCAGCTTT | TGCATCTCAG | GAAACTGTAT | ATAAAGATAT | TGGTGAAGAG | 240 | |||||||||
241 | ATGCTTCTTC | ATGCATTTGA | AGGATATAAT | GTTTGCATAT | TTGCATATGG | TCAAACTGGA | 300 | |||||||||
301 | GCTGGTAAAA | GTTATACTAT | GATGGGTAAG | CAAGAAGAGG | GTCAAGAAGG | AATCATTCCA | 360 | |||||||||
361 | CACATCTGTA | AAGATCTTTT | CCGCAAAATT | AAAGATGCCC | AAAATAATGA | TACATTATAC | 420 | |||||||||
421 | TCAGTGGAGG | TGAGCTATAT | GGAAATCTAC | TGTGAGAGGG | TAAGGGACCT | GTTAAATCCA | 480 | |||||||||
481 | AAGAACAAAA | ATAATTTAAG | AGTGAGAGAA | CATCCTTTAT | TGGGCCCTTA | TGTTGAAGAT | 540 | |||||||||
541 | TTATCAAAAC | TTGCTGTTAC | TAACTATCAA | GATATTCATG | ACTTAATGGA | TGAGGGTAAC | 600 | |||||||||
601 | AAAGCAAGGA | CAGTTGCAGC | TACCAATATG | AATGAAACAA | GTAGTCGTTC | TCATGCTGTT | 660 | |||||||||
661 | TTTACAATTA | TTTTTACACA | GAGAAAGCAT | GATAACGGCA | CTGGTTTAAC | TGCGGAAAAG | 720 | |||||||||
721 | GTAAGCAAAA | TCAGCTTAGT | TGATTTAGCT | GGTAGTGAAA | GAGCTGATTC | CACTGGAGCT | 780 | |||||||||
781 | CAGGGAACTC | GACTAAAAGA | AGGGGCTAAC | ATTAACAAGT | CTTTAACAAC | TTTGGGTAAA | 840 | |||||||||
841 | GTCATTTCTG | CCTTAGCTGA | AATTGCTGCA | ACAAAAAAGA | AGAAGAAAGC | TGATTTCATT | 900 | |||||||||
901 | CCATACAGAG | ATTCTGCTTT | AACATGGCTC | CTTCGAGAAA | ATCTTGGTGG | AAATTCTAAA | 960 | |||||||||
961 | ACTGCTATGA | TTGCTGCAAT | CAGTCCTGCA | GATATTAATT | ATGATGAAAC | TTTAAGCACA | 1020 | |||||||||
1021 | CTCAGGTATG | CTGATCGAGC | TAAACAGATC | GTCTGTAAAG | CTGTTGTTAA | TGAAGATGCC | 1080 | |||||||||
1081 | AATGCCAAAC | TCATTCGTGA | ACTCAAGGAT | GAGATTGAAA | GACTTAAAGC | TATGCTCAGA | 1140 | |||||||||
1141 | GCTGGAGGCA | TTGATGCAGA | TGCTGTCGAA | GGATCCAATA | ATCCCAGCAA | AGCCACTGTT | 1200 | |||||||||
1201 | GAAGAATGTA | ATAATAACCC | TAGCAAAGCC | TCTGTCGAAG | GATGCAATAA | CTCTGGCAAA | 1260 | |||||||||
1261 | GCCAATGAAA | ACAACAAGAA | TGCTATAAAT | AAGAAAAAAC | AGAGAACAGT | TTCATCAAGT | 1320 | |||||||||
1321 | GGTGAAGATG | TTATTGAGCA | ACTACAAGAA | TCTGAAAAAC | TTATTGCAGA | ACTAAATGAA | 1380 | |||||||||
1381 | ACATGGGAGG | AAAAGTTAAA | GAAAACTGAA | GCTATACGTC | TTCAAAGAGA | GGCTGTATTT | 1440 | |||||||||
1441 | GCTGAAATGG | GTGTTGCCTT | GAGGGAAGAT | GGGGATACTG | TGGGAGTGTT | TTCTCCGAAA | 1500 | |||||||||
1501 | AAAGTAAAGA | CACCTCATTT | AGTTAATTTA | AATGAAGATC | CACTAATGTC | AGAATGTCTT | 1560 | |||||||||
1561 | ATCTACTACA | TTAAAGATGG | CATAACTAGG | GTAGGAAGAC | CTGATGCAAA | TGTCCCTCAA | 1620 | |||||||||
1621 | GATATTAAGC | TTACTGGATC | TCATATATTA | AATGAACATT | GTCTGTTTGA | AAACTTTGAA | 1680 | |||||||||
1681 | GGCATTGTAA | CCCTGAAGTC | ATGTCCCAAT | GCAATGTGCT | ATGTTAATGG | CCGAGAAGTT | 1740 | |||||||||
1741 | GCTGATGCAA | CTGTTTTACA | AACAGGTTCC | AGAGTTATTT | TAGGAAAATA | TCATGTGTTT | 1800 | |||||||||
1801 | AGATTCCAAA | ATCCAGAACA | AGCTCGTGAA | TGCAGAAAAT | CTCTCATCGA | AACTTCTTCA | 1860 | |||||||||
1861 | TCAGGTATTA | TACCTAAGGA | TTCTATTTTA | AACCATCCAG | GTGGAGAGCC | TGTTGACTGG | 1920 | |||||||||
1921 | ACTTTTGCAC | AATTAGAATT | ACTAGAGAAA | CAAGGCATTG | ATCTTAAGAT | AGAAATGGAG | 1980 | |||||||||
1981 | AAAAAACTAG | TTGCTCTTGA | AGAACAATAC | AAAAAAGAGA | AAGAAGAAGC | AGACCAAATA | 2040 | |||||||||
2041 | TTCCAACAAG | AAAAGAAGAA | TTATGAAGCA | AAAATTGAAA | GTCTCCAAAG | ACAGGTAGAA | 2100 | |||||||||
2101 | GAACAATCAA | TGATGTCCAG | CATGTATAGC | TCATGTTGTA | TAAATGAATT | AGAAGCTACC | 2160 | |||||||||
2161 | ACTGATGAAG | ATAATGATTA | CATTGAGCCT | GTTTGGACAG | AAGATCAATA | TCAACTTGCA | 2220 | |||||||||
2221 | GAATGGGCAT | TCTTCAAATG | GAAATATCAT | CAGTTTACAT | CTCTTCGTGA | TGATTTGTGG | 2280 | |||||||||
2281 | GGAAATGCTA | TTTTCTTGAA | AGAAGCTAAT | GCCATTAGTG | TAGAGTTGAA | GAAAAAAGTG | 2340 | |||||||||
2341 | CAATTCCAAT | TTGTTCTTTT | GACTGATACT | TTGTATTCAC | CATTGCTGCC | TGACATGTTG | 2400 | |||||||||
2401 | AACCATGATG | ATATTGAAGA | AGGAATGGAA | AGACCATACC | CTCGTACTAT | TGTTGCAATA | 2460 | |||||||||
2461 | GAAGTTCAAG | ATACAAAAAA | TGGAGCCACT | CATTATTGGA | CCCTGAGTAA | ACTTAGACAA | 2520 | |||||||||
2521 | CGGTTGGAAC | TCATGAGGGA | AATGTATCAT | AATGAGGCTG | AGTTGTCACC | TACTTCACCA | 2580 | |||||||||
2581 | GAATATAATG | TTGATAGTAT | AACAGGTGGC | GATCCTTTTT | ATGATCGATT | TCCATGGTTT | 2640 | |||||||||
2641 | AGGCTTATTG | GAAGGGCATT | TGTTTACCTG | AGAAACTTGC | TGTATCCAGT | TCCTTTGATA | 2700 | |||||||||
2701 | CAGAAAGTAG | CCATTGTAAA | TGAAAAAGGA | GATGTCAAAG | GATATCTCAG | AGTCGCTGTT | 2760 | |||||||||
2761 | CAGGCTGTTG | TCGATGATGA | AGAGACTTCT | GATGTGAACC | ACCGAGGTGT | TAGGCAGTCA | 2820 | |||||||||
2821 | GCTCGAATTA | GCTTTAGCGA | TGATTTATTT | CAAAAACAAA | AGAAGGGAAT | GAAGAAAGAA | 2880 | |||||||||
2881 | AAGGAAGGCT | CAGGATCTGA | TAAAGATTTT | AGTTCATCTC | AGGAACGAAT | TGTAGAAGGA | 2940 | |||||||||
2941 | CAGGGACCAA | CACCTGAAAA | TTCAGGATTT | GAAATAGATA | TGTACTGCAA | CGAGGAAAAC | 3000 | |||||||||
3001 | AATAAGCAAT | GTGATGAAAA | ATGTAAGTTA | CTGTTAGAAA | ATGAAGGGAA | AGAATGTGAT | 3060 | |||||||||
3061 | CATCCCGATC | ATTTGCATAT | AGGAAAAGAA | TTTACTTTCC | GAGTTACAGT | TCTACAAGCT | 3120 | |||||||||
3121 | ATTAATATTT | CCAAAGAATA | TGCTGATATT | TTCTGTCAAT | TCAATTTTCA | TCATCGTCAT | 3180 | |||||||||
3181 | GATGAAGCCT | TTTCTACTGA | ACCCCTTAAA | AATACTGGGA | AAAGTCATTC | TCCTGGCTTC | 3240 | |||||||||
3241 | TTCCATGTAC | AGAATATTAC | CGTTACTGTA | ACAAAATCCT | TCTTAGAGTA | TATAAAAGCT | 3300 | |||||||||
3301 | CAACCCATAG | TTTTTGAAGT | TTTTGGTCAC | TATCAGCAAC | ATCCTCTACA | CAGAGACTCT | 3360 | |||||||||
3361 | CGGGATTGTG | TTTCTCAACA | AAATAACCGA | CAGCCTCCTA | GAAGAATGTT | CCCACAGTCC | 3420 | |||||||||
3421 | ATACCTATTT | CACAACCTAT | TCGTTCACCC | AAGTTTGGTG | TTTTGCAGTC | CCTAAGCACA | 3480 | |||||||||
3481 | ACTCATATAC | ATGCTAGACA | TGACTTGTTA | GTCTGGTTTG | AGATTTGTGA | ATTAGAGCCA | 3540 | |||||||||
3541 | AATGGAGAAT | ATGTGCCTGC | TGTTGTTGAC | CATAATGATG | ATAGTCCCTG | CCGAGGGACC | 3600 | |||||||||
3601 | TTTTTATTAC | ATCAAGGTAT | TCAGCGACGT | ATTAGAATTA | CATTAGTTCA | TGAACCTATG | 3660 | |||||||||
3661 | ATAGATTTCC | AATGGAAAGA | AGTGCGTGAA | TTAGTTGTAG | GTCGCATTCG | TACCACACCT | 3720 | |||||||||
3721 | GAATGTGATG | AAGATGATCT | TGATACTTCA | GTTTTATCAT | TAGGGATATT | CCCTGGTGAT | 3780 | |||||||||
3781 | TATTATGAAA | AAACTGCTGA | TGACAGAACA | TTTTATCGAT | TTGAAGCAGC | ATGGGATAGT | 3840 | |||||||||
3841 | TCCTTGCATA | ATTCTGCCTT | AATGAATCGA | TCTACACCTA | CTGGAGAAAG | AATATATATG | 3900 | |||||||||
3901 | ACACTATCTG | CATATCTTGA | ACTTGAAAAT | TGTGCTCAGC | CAGCTATAAT | AACCAAAGAT | 3960 | |||||||||
3961 | TTGTGTCTAA | TTATATGTGG | AAGAGATGCA | AGAACTGTAC | CTAGGATATC | ACCTAATGCT | 4020 | |||||||||
4021 | AGATCTTTGA | GGCATCTGTT | CTCGGGATCT | TACAAGAACT | CTGAAGGCAA | TCATGTAACT | 4080 | |||||||||
4081 | GGAGTGTATG | AAGTTCTTAT | GAAGAGGGCA | GCTGATTCAG | GTAGTCCAGG | AGTGCAAAGA | 4140 | |||||||||
4141 | AGACAGAGAC | GTGTATTAGA | TACATCTTCT | ACATATGTAC | GAGGAGAAGA | GAATTTGCAT | 4200 | |||||||||
4201 | GGATGGAGAC | CACGTGGAGA | TTCTCTTATA | TTTGATCATC | AGTGGGAATT | GGAAAAGATG | 4260 | |||||||||
4261 | ACCAGATTGG | AAGATGTTGA | AAAAGTACGA | CATCTCTTGC | TTCTACGAGA | AAAGTTAGGT | 4320 | |||||||||
4321 | ATAGATAACT | CTATGGGACA | TACACCTGAT | ATTAGCAAAA | TGGAAAAAGA | TGCATGCAAT | 4380 | |||||||||
4381 | TTAGTAGCCA | AAGCATCTAG | TGAGGGTGGT | TTACCAACTG | CACCATTAGT | GCTTTCTCCT | 4440 | |||||||||
4441 | ACATCCCCTA | CTACAACCAA | TCGACTAATA | GTTGATGAGT | CAGTTTATGA | ACCATGGGAA | 4500 | |||||||||
4501 | ATGACTGAAA | GAGAAAAGGA | ACTTTCTACT | AAATGTGTTG | GTCTTATTAA | TAGTCATATT | 4560 | |||||||||
4561 | CCATCAAAAC | CTCCTCCTAC | ACCTTATACA | AAGGACGAGC | TTACAACTCC | AACTGAAGAT | 4620 | |||||||||
4621 | GTAGATGTAA | TATCCAGGTC | GTCTAGTGTT | CATTCAAGTA | TTGCATCTTC | ATCTTCTCAA | 4680 | |||||||||
4681 | GACTCTTTCC | TTAGAACCTT | ACCTATTGAC | AAATTCAATG | GTGGTGTCGA | CGATGAGCGC | 4740 | |||||||||
4741 | AGCTACCTTC | CCACTTCCAT | AGCTTCAAGA | TCCTCCTCCA | ATGTGCCACC | CTCTCATCGT | 4800 | |||||||||
4801 | AACTCTGGTC | GTTTCCTCTA | TGTTGCTGAA | GTGGAAGAGA | TAGGAGTTAG | CCCAGTGGTG | 4860 | |||||||||
4861 | TCAAGAAAAG | GCTACCTCAA | CTGCCTTGAT | GATAAGACCA | AGGGTTGGGT | AAAGCATTGG | 4920 | |||||||||
4921 | GTAGTTGTAC | GGCGGCCTTA | TGTTTTTATT | TACAAAAATG | AGAAAGATTT | AGTAGAACGT | 4980 | |||||||||
4981 | GGAATGATAA | ATCTAGCTAC | TGCCCAAGTG | GAATATAGTG | AAGATCAGGA | AGCTATGTTA | 5040 | |||||||||
5041 | AAGGTACCCA | ATACTTTCTC | AGTTGTTACC | AAACATCGGG | GTTTCTTACT | ACAGACCTTA | 5100 | |||||||||
5101 | GGGGATAAAG | AGGTTTATGA | ATGGCTCTAT | GCTATTAACC | CCCTTCTTGC | TGGTCAAATA | 5160 | |||||||||
5161 | AGGTCAAAAC | TTTCCCGAAA | ACGCCCCATT | CCAACATCTA | CA | 5202 |
Single Nucleotide Polymorphisms | ||||
1158 | A= 0.72 | G= 0.28 | ||
1848 | C= 0.80 | T= 0.20 | ||
2371 | T= 0.64 | C= 0.36 | ||
2439 | C= 0.56 | T= 0.44 | ||
2705 | A= 0.72 | G= 0.28 | ||
3106 | A= 0.77 | G= 0.23 | ||
3335 | A= 0.79 | G= 0.21 | ||
3403 | A= 0.85 | G= 0.15 | ||
3496 | A= 0.89 | G= 0.11 | ||
3885 | A= 0.71 | G= 0.29 | ||
4389 | C= 0.68 | T= 0.32 | ||
4768 | A= 0.86 | G= 0.14 | ||
4843 | G= 0.50 | A= 0.50 |