CSH_0436_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGCAGCAAC | AGCAGAATGG | CAACCCTCCT | CAGGGTGGAC | AGACGGAAAA | CGAACCAGAC | 60 | |||||||||
61 | GAGATGGAGC | GTGATTTGGC | TGATGATGCT | GTCTGGAAAA | GAATACAACA | AAATACCTTT | 120 | |||||||||
121 | ACAAGATGGG | CAAATGAGCA | TCTTAAAACT | GTAAATAAAA | ATATAACAAG | TTTGGAGACT | 180 | |||||||||
181 | GATTTGTCTG | ATGGTCTGCG | CTTGATATCT | TTAGTAGAAG | TTCTATCCGG | ACGGCGACTA | 240 | |||||||||
241 | CCAAAACATA | ATAAAAGACC | AAATTTTAGG | TCACAGAAAT | TAGAAAATGT | ATCCGTGGCT | 300 | |||||||||
301 | CTCAAATTTT | TACAAGAAGA | TGAAGGAATT | AAAATTGTAA | ATATAGACAG | TTCGGATATA | 360 | |||||||||
361 | GTTGACTGCA | AGCTTAAGCT | CATCCTTGGT | TTAATATGGA | CCCTTATTCT | ACACTATTCT | 420 | |||||||||
421 | ATATCCCTTC | CTATGTGGGA | GGGTGAAGAA | GGTGATTCAG | TTTTTGACAA | GAAAAGTGGA | 480 | |||||||||
481 | CCTTCACCCA | AACAAAGGTT | GCTTGGATGG | ATTCAGAGCA | AACTTCCTGA | TCTACCCATC | 540 | |||||||||
541 | AACAATTTCA | GTTCTGACTG | GAATGATGGT | CGAGCTGTTG | CAGCCTTGGT | GGATGCTCTT | 600 | |||||||||
601 | GCTCCAGGTT | TATGCCCTGA | CTGGTGTGAC | ATGAAACCTG | AAAATGCTCT | GCAGAATGCT | 660 | |||||||||
661 | AAAGATGCCA | TGAATCTTGC | AGATAACTGG | TTGGGAGTGC | CTCAATTAGT | AAAACCAGAG | 720 | |||||||||
721 | GAAATGGTGA | ATCCTAATGT | AGATGAGTTA | TCTATGATGA | CTTACTTGTC | TCAGTACCCC | 780 | |||||||||
781 | AAGGCTGAGT | TGAAGCCTGG | TGCACCATTG | AGGCCAAGGA | CAAATCCAAA | CAGAGTTCGC | 840 | |||||||||
841 | TGCTATGGAC | CTGGTATTGA | ACCCACTGGA | GTGAATGTGG | GTGCACCAAC | AATGTTTACT | 900 | |||||||||
901 | GTTGAAACAT | TCAGTGCTGG | TAAAGGCAAA | GTAGAAGTTT | TCATTGAGAA | TCCTAAAGGA | 960 | |||||||||
961 | CAGTTGGAGC | CTGTTGAGAT | AAAATTCAAT | GATGATCGAA | GCAAAACCTA | CACTGTTACT | 1020 | |||||||||
1021 | TACACTGCTA | AAATTGAAGG | TCTTCATAAA | GTTAAAGTTG | TGTTTGCTGG | AAAGGAAGTT | 1080 | |||||||||
1081 | CCTAAAAGTC | CATTTAATGT | CATGGTTGAA | GGTCATGCTG | GTGATCCATC | TAAAGTTACT | 1140 | |||||||||
1141 | GCATCTGGTC | CTGGCCTAGA | ACCTACTGGA | GTTATGGTTG | GAAAGCCAAC | ATATTTTGAC | 1200 | |||||||||
1201 | ATTTTCACTA | AAGATGCTGG | TCGTGGCCAA | GTGGAAGTTA | TAATTCTTGA | TCCTAAAGGC | 1260 | |||||||||
1261 | AACAGAAATA | CTGTTCCTTG | CAGAATTCGC | AAAACAGAAG | AGAATGTTTA | TAGGTGTGAA | 1320 | |||||||||
1321 | TATGTGGCTC | AGACTACTGG | AATGCACTCA | GTAAATGTGT | TCTTTGCTGG | ACAACAAATA | 1380 | |||||||||
1381 | CCTAAGAGTC | CATTTGGAGT | TAAAGTTACT | CCAGTTTGTG | ATGCACGCAA | AGTGAGAGCT | 1440 | |||||||||
1441 | ACTGGCAGAG | GTCTTCAGCA | AACTGGTGTT | AGGGTTAAAG | ATATTGCAGA | CTTTAAAATC | 1500 | |||||||||
1501 | TTCACTGAAA | ATGCTGGTAA | TGGTCAATTG | GATGTTAAAG | TTATTGGACC | AGGTGGTGTT | 1560 | |||||||||
1561 | CAAGAAAAAC | TTGATATTCG | TAGAGTTGAT | GAACATACTT | ATGATTGTGC | ATACTATCCC | 1620 | |||||||||
1621 | CAAAAAGAGG | GTCGATACAT | TGTTACTATC | TCTTATGGAG | GTCAAGAAAT | ATTCAAAAGT | 1680 | |||||||||
1681 | CCTTATGAAG | TAAATGTCGC | TCCTTACAAA | GAGTCTCGAA | TCAAGGTATA | TGGTCCTGGA | 1740 | |||||||||
1741 | CTTCATGGAG | GTATTGTTGG | TTATCCTGCT | TGCTTTACTG | CTGAAACCAA | TGGTGAAACT | 1800 | |||||||||
1801 | GGAACATTAG | GTTTCTCAAT | CGAAGGTCCT | TCACAAGCCA | AAATTGATTG | CAAAGATAAT | 1860 | |||||||||
1861 | GGAGATGGAT | CTGCTGATGT | TCAGTACTTA | CCAACTGCAC | CTGGAGAATA | TGCCATTCAT | 1920 | |||||||||
1921 | ATTCTCTGCA | ACAAAGAAGA | TATTCCAAAA | TCACCTTACA | TGGCTCAAAT | TCTTCCTAAA | 1980 | |||||||||
1981 | ACTGATTATT | TCCCTGAGAA | GGTTGAGGCT | TATGGCCCTG | GTTTACAAAA | GACAGGAGTT | 2040 | |||||||||
2041 | GTTATTGGCC | AGCCCACAGA | CTTTACCATT | GATATACGTA | AAGCTGGAGG | TCATGCACCT | 2100 | |||||||||
2101 | CTTGATGTGA | GTGTGATGGA | TGATGAGTGC | AAACCTGTAG | ATGTCAAAGT | GACAGATAAT | 2160 | |||||||||
2161 | AAAGATGGTA | CCTTTAAAGC | CACTTACAAA | CCTACAAAAA | CCAGTAAGCA | TACAGTTCAA | 2220 | |||||||||
2221 | GTAAACTATG | GTGGAGTTGC | TATACCTAAG | AGTCCATTCA | GAGTTAATGT | TGGAGAGCCT | 2280 | |||||||||
2281 | ACTGACAGCA | ACAAAGTTAA | AGTATTTGGT | CCAGGAGTTG | AACCTGGTGT | AAAAGCGCAA | 2340 | |||||||||
2341 | GTGCCAACTC | ATTTCAATAT | TGACTGCAGA | GGTGCAGGAG | CAGGTAATGC | ACAGGTTAAA | 2400 | |||||||||
2401 | CTGACTGATG | AAAAAGGAGG | ACTTGTTCCT | GTACAAGTTA | TGGATAATGA | AGATGGAACA | 2460 | |||||||||
2461 | TATTCTGTAG | ATTACGTACC | ACCAAGTGCT | GGAAACTACA | AGGTTTCTGT | TGCATATGCT | 2520 | |||||||||
2521 | GGAAAAGAAA | TTCCAAATAG | TCCAATAAAG | GTTAAAGTTG | AGCCACAAAT | AGATGTCAGC | 2580 | |||||||||
2581 | AAAGTAAAAG | TTGATGGCTT | AGAACCAAGT | GTATTCTTGG | ATTCTCTTAC | TGATTTCATT | 2640 | |||||||||
2641 | GTTGATGCTA | GAGCTGTCTC | CAAACGCAGT | GATGCAAAAG | TTCAGTGTAC | TATTATTAAT | 2700 | |||||||||
2701 | CCATCTGGGG | CTAGAACAGA | TTCATATGTT | CAAAGCCTAA | ATGATGGAAC | TTACAGAATT | 2760 | |||||||||
2761 | TGTTATACAC | CATTTGAAGA | AGGAAACCAC | ACTATTGACA | TAACATATGA | TGGCTTGCCT | 2820 | |||||||||
2821 | GTACCTGGTA | GTCCTTTTAA | AGTCAATGTT | ATGAGAGGTT | GTGATCCTAG | AAAAGTCAAA | 2880 | |||||||||
2881 | GCATTTGGTC | CAGGCTTAGA | ACAGGCTATT | GTTAATCAAA | CTAACACATT | TACTATTGAA | 2940 | |||||||||
2941 | ACAAAAGGGG | CTGGTAGAGG | AGGTCTTGGC | TTAGCCATTG | TTGGACCAAC | AGAGCCTAAA | 3000 | |||||||||
3001 | ATGACATGCA | GAGATAACAG | AGATGGCTCT | TGCACAGTTG | AATATGTGCC | TCTTGCAGAG | 3060 | |||||||||
3061 | GGACCTCATG | AAATTGATGT | GAAATTCAAC | GATCAGCATG | TCCCTGGAAG | TCCTTTCAAT | 3120 | |||||||||
3121 | GTTCTGTGCA | CTGCTGCTGT | TGATGCTAGC | AAGGTGAAAG | CTTCTGGACC | TGGAATTGAA | 3180 | |||||||||
3181 | CCAAACCAGT | GCAGGGCTGG | ACAGAAACTT | CCATTTACTG | TGGATGCTTC | TAAATCAGGA | 3240 | |||||||||
3241 | AAGGCTCCAC | TTGATGTTCA | AGTAACATCC | GACAAAGGCC | CAATACCTGT | GAAGCCAGAA | 3300 | |||||||||
3301 | ATTGTTGATA | AAGGAAATAA | CACCTATGAT | GTAGCTTATG | TTCCACCTCC | TGAAGGAAGT | 3360 | |||||||||
3361 | AAATGCAATG | TCAAAGTACT | ATATGGAGGA | AAAGATATTC | CTGGAAGTCC | ATTCCAGATG | 3420 | |||||||||
3421 | AAAGTGAAAC | CTGCTGTAGA | ACCCAAGAAT | GTCAAACTCT | CTGGTCCAGG | ATTGCAAAAT | 3480 | |||||||||
3481 | CAAGTACCAG | CCAGTATCCC | AGTTGAGTTC | ACCATTGATA | CTAAAGAAGC | TGGAAAAGCT | 3540 | |||||||||
3541 | GAACCAGAAG | TTTCTATTAG | GAGACCAGAT | GGAAAGCCAT | TAAAAGCTAA | AGTAACAGAT | 3600 | |||||||||
3601 | AATAAGAATG | GCACATACAA | AGTATCTTAT | GTGCCTGAAG | ATGTTGGACC | ACATAAAGTA | 3660 | |||||||||
3661 | TCTGTTAAAT | ATGGGGGTCA | AGATGTTCCA | AACTCACCTG | TTACAGTTAA | CAGTTATGCT | 3720 | |||||||||
3721 | GTAGGTCAAG | CTGACAAATG | TAAAATTACT | GAGGGTGTTC | AAGATAAGGT | TTCAATTGGA | 3780 | |||||||||
3781 | GAAGAATACT | GCATCACTGT | GAATGCTAAT | GAGGCTGGTA | CAGGAGCTGT | AACATGCCAC | 3840 | |||||||||
3841 | ATTACAAGCA | GCAACACATC | TGGAGATGTT | GACATACAGG | TTGAAGATAA | TGGTGATGGT | 3900 | |||||||||
3901 | ACATTTTCTA | TTTTCTACTC | TGTTAAAGAA | GTTGGAGATT | ACAGCATCAG | TATGAAGTTT | 3960 | |||||||||
3961 | GGGGGTAACC | CAGTACCAGG | AGGTACCTTT | TCATTCCAGG | CTGTCACAGA | ACAAGTTGAA | 4020 | |||||||||
4021 | AGAAAATCAG | TGCGAACTCG | TACAACTCAG | TCAAAAACTA | CTCAGTTCAG | AAGTGTAGAG | 4080 | |||||||||
4081 | TTACATAGCA | TTGTAATCCC | ACCTGGTGGT | CAAGGACGAA | TTACTGCTGA | AGTCAAGATG | 4140 | |||||||||
4141 | CCATCTGGAA | AGTATGATAA | GCCAGAGGTG | ATAGATAATC | AGGATGGTAC | TATTTCTATT | 4200 | |||||||||
4201 | AAATATGACC | CCCGAGAGGA | AGGTCTTCAT | GAGCTACATG | TAAAATATAA | TCAAGAACAC | 4260 | |||||||||
4261 | ATACCAGGAA | GTCCTTTCAA | AATCTATGTG | GATTCTATCA | CAAGTGGTTA | TGTAACAGCA | 4320 | |||||||||
4321 | CATGGCCCTG | GTTTAGCTCG | TGGCATTGCT | GGAGAACCTG | CAAACTTTAC | AATTTACACT | 4380 | |||||||||
4381 | AAAGAGGCTG | GTGTAGGAGG | CTTAGCTGTA | GCTGTTGAGG | GTCCATCTAA | GGCTGAAATC | 4440 | |||||||||
4441 | AACTGCCATG | ACAATAAAGA | TGGTACTGTT | GCCGTAAATT | ATTTGCCTGC | AGCTCCTGGT | 4500 | |||||||||
4501 | GAATACAAAA | TTATTGTGAA | GTTTGCTGGG | AAGGACATTA | AAGGCAGTCC | TTTCACTGCA | 4560 | |||||||||
4561 | AAAATTACAG | GAGAAGGACG | CAAAAGGAAC | CAAATTTCTG | TTGGACATTC | AAGTGAAGTT | 4620 | |||||||||
4621 | TCTCTCAAAA | TTCAAGAGAA | AGATACTAAA | AACCTTAATG | CTAGTATTGT | TTCCCCTTCA | 4680 | |||||||||
4681 | GGTTTAGAAG | AACCATGCTT | CTTAAAAACT | CTTCCTAATG | GACACTTAGG | TATTTCTTTC | 4740 | |||||||||
4741 | ACTCCTCGTG | AGGCTGGTGA | GCACTTAGTA | AATGTAAAGC | GTACTGGAAA | TCACATTCAG | 4800 | |||||||||
4801 | GGTAGCCCAT | TTAAGATCAA | TGTTTTAGAC | AGAGAAATTG | GAGACTCCTC | TAAGGTTAAA | 4860 | |||||||||
4861 | GTCACTGGTG | ATGCTTTGAA | AGAAGGCAAG | ACCCAAGTAG | CAAATGAATT | TGTCATTGAT | 4920 | |||||||||
4921 | ACTAAAGAAG | CAGGATTTGG | TGGTCTCAGT | CTTTCAGTAG | AAGGTCCCAG | CAAAGCTGAT | 4980 | |||||||||
4981 | ATCCAGTGCA | AAGATAATGA | AGATGGAACT | TTAACGGTTA | GCTATAAGCC | AACAGAACCT | 5040 | |||||||||
5041 | GGTTACTATA | TTGTAAACTT | GAAATTTGCT | GATCACCATG | TCCCAGGCAG | TCCTTTCACT | 5100 | |||||||||
5101 | GTAAAAGTCT | TGGGTCAAGG | CTCAAACATC | CAGAGAGAAC | ATATCAAGAG | ACAGAGAGAA | 5160 | |||||||||
5161 | TCTGCCCCTG | TAGCAGAAAT | TGGAAATGAA | TGCAAATTAA | CTTTCAAGCT | TCCAGGGGCC | 5220 | |||||||||
5221 | AGTGCCTTTG | ATATGTCAGC | TCGTGTGACA | TCTCCATCTG | GTGTTACAGA | TGATGCTGCA | 5280 | |||||||||
5281 | ATTTCAGACT | TAGATGACTT | TTTGTACTGT | GTCCAGTTTG | TACCCAAAGA | AGTTGGTGTC | 5340 | |||||||||
5341 | CACACTGTTA | GTGTTCTTAA | CAAAACCATT | CACATCCCAG | GATCTCCATT | TCAATTTACT | 5400 | |||||||||
5401 | GTTGGTCCAT | TCAGGGACCA | TGGTGCTCAC | AGAGTGCATG | CTGGTGGACC | TGGTTTAATG | 5460 | |||||||||
5461 | AGAGGAAATA | CCAATGAAGC | ATGTGAATTT | AATGTATGGA | CTCGTGAAGC | TGGAGCTGGA | 5520 | |||||||||
5521 | AGCCTTGCCA | TTTCCGCTGA | GGGTCCATCC | AAGGCAGATA | TAGACTTTAA | AGATCGCAAA | 5580 | |||||||||
5581 | GATGGCTCCT | GCTATGTGAC | ATATAAAGTT | ACAGAACCAG | GTGACTATCG | TGTTGGCATC | 5640 | |||||||||
5641 | AAATTTAATG | ATCAGCATAT | CCCTGACAGT | CCTTTCTATG | TTTACATTAT | GCCACCAGCA | 5700 | |||||||||
5701 | GGTGATGCTA | ACAAGATTGA | AATGGGCCAA | ATGCCTGATA | ATATGAAAGT | TAACAAACCA | 5760 | |||||||||
5761 | GTTATCTTAG | CTATTGTTAT | GAATGGAGCT | AAAGGAAATT | TAGATGGTAA | AGTGATAACA | 5820 | |||||||||
5821 | CCTTCAGGAA | CAGAAGATGA | CTGCTACATT | GCTCCTCTTG | ATGCTGATCA | ATGGGCCCTG | 5880 | |||||||||
5881 | CGATTTATGC | CACGAGAAAA | TGGCATTCAT | TTAATAAATA | TCCGCTGTAA | TGGTGTTCAT | 5940 | |||||||||
5941 | ATCCCAGAAA | GTCCTCTTCG | ATTGAGAGTT | GGTATTGATG | ATGCTGATCC | TGCAGCTGTT | 6000 | |||||||||
6001 | CAAGCCTATG | GTCAAGGTCT | GAAAGAAGCT | AAGGCTGGTA | CCAAAATGGA | TTTCATTGTG | 6060 | |||||||||
6061 | GATACATGCA | GTGCTGGTGT | AGGTACTCTT | GCAGTCACAA | TTGATGGTCC | CTCTAAAGTA | 6120 | |||||||||
6121 | TCTATGGACT | GCACTGAAGT | AGAGGAAGGT | TACAAAGTCA | GATATACACC | TTTGGCTCCT | 6180 | |||||||||
6181 | GGAGATTACT | TCATAACTGT | GAAATATAAT | GGATATCATA | TTAGTGGCAG | TCCTTTCAAA | 6240 | |||||||||
6241 | GTTTCATGTT | CTGGTAATGC | TGTCACTGAT | GTGGGTGGTA | AAGAGCAGTC | TTCTGTTGTT | 6300 | |||||||||
6301 | GTTGATACTG | TTGCTAAGCA | AGCCAAGCAG | AGAGCTGACC | ATTTACCCAG | GTTCCGTTCT | 6360 | |||||||||
6361 | GATCCTGCCA | AGGTTACTAG | TAAAGGTGTT | GGACTGAAAC | GAGCTCACTT | ACATAAATCA | 6420 | |||||||||
6421 | AGCCAGTTTA | CAGTAAATTG | TGGAGATGCA | GGAAACAATG | TTCTTTACTG | TGCTGTCTAT | 6480 | |||||||||
6481 | GGTCCCAAAG | GTCCCTGTGA | TGAAGTCTAT | GTAAAACATC | TAGGACGAAA | TCTGTACCAA | 6540 | |||||||||
6541 | GTAAACTATA | CTGTTAAAGA | AAGGGGTGAT | CACATTGTTA | TTGTCAAGTG | GGGTGAGGAC | 6600 | |||||||||
6601 | CATATCCCTG | GCAGTCCATT | CAAAGTAGAG | GTATCT | 6636 |
Single Nucleotide Polymorphisms | ||||
81 | T= 0.85 | C= 0.15 | ||
1332 | G= 0.84 | A= 0.16 | ||
1713 | G= 0.77 | A= 0.23 | ||
2511 | T= 0.66 | A= 0.34 | ||
2580 | C= 0.87 | T= 0.13 | ||
3006 | A= 0.85 | T= 0.15 | ||
3200 | G= 0.79 | A= 0.19 | C= 0.02 | |
3301 | A= 0.76 | G= 0.24 | ||
3423 | A= 0.77 | G= 0.23 | ||
4545 | C= 0.71 | T= 0.29 | ||
5205 | C= 0.50 | T= 0.50 | ||
5974 | A= 0.61 | G= 0.39 |