CSH_0487_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGGACTTAC | CTTCTCCTGG | CTCACCGGAT | AAGTTAAACA | TTTTAACTCG | AAACGATTCC | 60 | |||||||||
61 | AGTTTGCATA | AAGATAAAGA | TGAACTATCT | CATAGTTCTG | AAGTGAATGA | ATCGCAAGAC | 120 | |||||||||
121 | CTTATGGTTC | AACGTTGCGT | CATCATTCAG | AAGGATGAGA | AAGGATATGG | CCTTACTGTA | 180 | |||||||||
181 | TCTGGTGATA | ATCCAGTTTT | TGTGATATCT | GTAAAAGAAG | ATGGAGCAGC | TGCAAGGGCT | 240 | |||||||||
241 | GGAGTACAGC | AAGGTGATAG | GATCATCAAA | GTTAATGGTA | CACTTGTTAC | TCAGTCTAAT | 300 | |||||||||
301 | CACCAGGAAG | TTGTAGAGCT | TATTAAATCT | GGTTCCTACG | TGGCTCTTAC | TTTATTGGGG | 360 | |||||||||
361 | AAGCCTTTAG | GCCATGGAAA | AGGGTCTTTG | AGTCCTCAAC | AGTCATTTAG | CATACCAACA | 420 | |||||||||
421 | AGCAATGCCA | GTATGAATAA | TAGTTCAAAT | AAATCCCCAT | CTTCTGACAT | GATTACTGCC | 480 | |||||||||
481 | CCTCAACCTG | TTGATCCTGA | AAAACAGCAG | CAGCTTACCA | ATTCACGTAT | ACACACTATT | 540 | |||||||||
541 | CGAAAAATGT | TGGAAAAGGA | AGTTGTGTAT | CTTGAGAACC | TTCGATCAGA | ATTCTCCAAA | 600 | |||||||||
601 | ACCCCTTCTG | AAAAAATTCG | CTCTGAAGTC | AGTGGTGCTG | CAAAACGAGT | GAAAACTTTA | 660 | |||||||||
661 | GAAGAACAAC | TTTTTAACCT | CACTGGTATT | CCCCATGAGC | ACATTGGGAC | AAGATCTCCA | 720 | |||||||||
721 | AAATCTCCTA | CCACTGGTCG | CCATACTTAT | GATAAAGAAG | GTTTTCGATC | TGTGTCCTTT | 780 | |||||||||
781 | CCAGCTCCTG | GCCATCATAA | TCGTCCTTTA | ATTCATCAAA | TCTCAGCTCC | AGCATTACCT | 840 | |||||||||
841 | GCAAATCAAG | ACTCTAATCA | TCCTGTGACT | TCATCTCCTG | ATTCTAGTGA | TCCCAAGTAT | 900 | |||||||||
901 | CATTTAACAT | TATCCCCTTG | CACAGAGTCT | CATGAAAAAT | CAGATAAAAG | TAAATCTGCT | 960 | |||||||||
961 | GATGTACAAA | AACAGTCATT | GTCAACCTCC | CTCGAAAACA | TTGTGAAGCA | TCTAAACCCT | 1020 | |||||||||
1021 | AGAACCACAA | CATGGCCTCA | GCCAACTCAT | ACTAGACAAA | GCTCTAGCCC | CGAAACACTA | 1080 | |||||||||
1081 | GTTCATGGAC | TTGGAAGTAT | TAAGTGCCAA | AAAAGCAATG | GATGTACAAT | ACCAAGATCA | 1140 | |||||||||
1141 | GAGTCAGTAC | ATCGGTCACC | AAGTGCTGTT | TCACCTTCTT | ATGGAGGTTA | TAGAAGCTTA | 1200 | |||||||||
1201 | AGTTCAGATT | CAGAATCAAA | ATCCTCTCAT | CCTGCCATTA | CATCACATGG | TTCATCATTG | 1260 | |||||||||
1261 | GGCCAGTATG | AAAGTGCTGT | TGAAAGTCCA | ACTACATCTC | CAGCAACAGT | GCCTCCTGAG | 1320 | |||||||||
1321 | TCAGAAGAAG | TTCGTCGCCC | TGGGGATGGA | TTAGAAGATG | AAAATGCTGC | TCATGAAGAA | 1380 | |||||||||
1381 | TACGGAACTC | CTCCTGAGTC | ATCTACAAAT | GAAGTTAATC | TCCAGTCAGT | GATATCAAAA | 1440 | |||||||||
1441 | TTAGGACAAA | ATCCAAACAT | AATTTGTATG | GAGGATGATG | ACTTTTCATC | TGACACAGAA | 1500 | |||||||||
1501 | GTGGGACATT | TAGAAGACCA | TGGTCCATTC | AGTGGATTGT | GGAAACTTGT | AAGGCATCCT | 1560 | |||||||||
1561 | GCACACCTCT | CAGTTTTTTT | ACATTACTTA | ATGTCAAATA | GTGACCCTTC | TAGTTTGTTC | 1620 | |||||||||
1621 | TTTTACCTCA | TATCTAATAT | GTACCAACAA | GGTACTGGAA | AAGAAATGAA | AAAGTGGGCT | 1680 | |||||||||
1681 | TATGAAATCC | ATTCTAGTTT | TTTGGTGATT | GGCGCACCTC | TTAAAGTGTC | TCTGGTTGAT | 1740 | |||||||||
1741 | GAAACAATTT | TGCATGAAAT | AGATGAAGTT | CTTCTGAATC | ACATTGACAA | AGAAGACATT | 1800 | |||||||||
1801 | TTGCGGGAAG | TATTTAAAGA | AGCTAGGAAA | AAGGCCAAGG | AAGAATTAAA | TGATTTCCTT | 1860 | |||||||||
1861 | GCTGATTTTC | GAAATAAGCG | GACAATGGGC | TTAGCTAACA | TTTTTGGGCC | ACCTGATTAT | 1920 | |||||||||
1921 | CAGCTTGAAG | AAGCTATGCA | TGACAAAATC | AAAGAACTGA | AAATAATTGA | ACAAGTGCTA | 1980 | |||||||||
1981 | GTCCCTTGTT | TAGAGAGTTC | AAAGCCATAT | ATAGATGATT | TGGAAGGAAT | AGATGATCGT | 2040 | |||||||||
2041 | GCAACTGCTA | AAGCATATGC | ATTAGCAACT | ATACTGAAGC | AATTTGGTGC | AAAGAGTCCT | 2100 | |||||||||
2101 | CAAGCAGTTG | CCATTTTAGA | AAGATGCCCT | ACATTTGTAG | CAAAGGAAAA | ATCACTTTTT | 2160 | |||||||||
2161 | AGATTTCTTC | AAAGGAATAA | GAAGGTTATG | TTTATACAAG | GCCATCATTT | TATACCTCAA | 2220 | |||||||||
2221 | CATTATTACT | CTGTTACATT | TTGTAATCAT | TGTCAGCTAA | TCATCTGGGG | TGTTGGCGAT | 2280 | |||||||||
2281 | CAGGGCTATC | AATGCCAAAA | TTGTGAAATG | AATATTCACA | AATCTTGTGC | AAAAGTAGTT | 2340 | |||||||||
2341 | GAAGAACACT | GTATTGGTGC | TCTGAGGCAT | AAGAAGGAGA | AAAAAAGGGA | TAGAAAATCA | 2400 | |||||||||
2401 | TATATCATGG | AAAATATCAT | TGGTAAAACC | AGGAAGCCCA | GTCATACTGT | ACCTGCAGCT | 2460 | |||||||||
2461 | ATTGATAGAG | CTAGAAAACT | ACATGAAGAA | ATGAATGCTG | ATAATGGTCT | TCCTGCGAGT | 2520 | |||||||||
2521 | GACAGCAATT | CAAAATCTGA | AACAGGTGAT | AAAATTGGGG | AAGAATCGAA | GGAGTCTTCA | 2580 | |||||||||
2581 | GAAGTAGTCT | TTCAGAATAT | GGTTAATTTA | TCTGAATCAA | TGGAAAAATC | TAATCTCAAC | 2640 | |||||||||
2641 | AAGAAAAGTG | CCGCGTCCAT | TGGGCGGTCC | GAGAGCTTCA | GGCAAAGGAG | AGAAAGCAAG | 2700 | |||||||||
2701 | CCCTCCTTTA | GAAAAAGGAG | TGATCCTAAC | ATTCCACGAT | CTAAAAGTGA | TGTGGATGTA | 2760 | |||||||||
2761 | GATGAAAAAA | ATACTGGTTT | AAATGAATCT | AGGAGTTCTT | CCAATTCAAG | TTTGTCGAAC | 2820 | |||||||||
2821 | CGGAGCTTGG | ACAGTCCTTG | CAATTCATCA | GAAATGGTGC | ACAGGACTCC | TACTTCCGTG | 2880 | |||||||||
2881 | TCGGCTGATT | CTGTACCTGC | CAATTTTGCT | CCAAGTGCTA | TTACATCATC | TAGTGGGCAT | 2940 | |||||||||
2941 | AGTACAACAA | TGCATGTGTA | TGATGATTCA | GATCTTGAAA | CTGAAGTTGA | TCCTCCCACT | 3000 | |||||||||
3001 | TGGCAAGAAA | ATGTTGATTG | GGATGTTTTG | AAGGTGATGA | AACCAAAGGA | AAGAAAAAGA | 3060 | |||||||||
3061 | CAAGATGTTA | TTAATGAACT | GTTTCATACT | GAAAGGACAC | ATGTCAGAAA | TTTAAAAGTG | 3120 | |||||||||
3121 | CTAGACAAGC | TTTTCTATAG | ACCTATGATT | CAGGAACAAC | TATTACCAAC | TGATTTTTTG | 3180 | |||||||||
3181 | AGTCTTCTTT | TCCCAAATTT | AGAAGAAATG | TTGGATATAC | ACTGTAACTT | CAATCAAAAA | 3240 | |||||||||
3241 | TTGAAGGCTC | GTAGAAAAGC | AGAACCTGTT | ATTGGTGATA | TTGGGCAGAT | CATGTTGGAA | 3300 | |||||||||
3301 | ATGTTTGATG | GATCATCAGG | AGAACATCTG | AAACATGCAG | CAGCAACATA | TTGTGAGAAT | 3360 | |||||||||
3361 | CAGTCCATAG | CTCTTGAGAG | TTTAAAAATT | CGCCAAAAGA | AAGATCAAAA | GTTAGCACAA | 3420 | |||||||||
3421 | AGTTTATCTG | ATGCTGAAAT | GAATAATTTA | TGCAGGAGGT | TGCAGTTGAA | AGACATTATT | 3480 | |||||||||
3481 | GCATCAGGTT | TCCAAAGACT | CACAAAGTAT | CCTCTTTTAT | TGGAAAACAT | AGCAAAGTAT | 3540 | |||||||||
3541 | ACTCCACCCA | ATACTCAGGA | GCTTTTTGAT | CTTCAGCGAG | CAGTTGACTG | TAGCAAAGAA | 3600 | |||||||||
3601 | ATTTTGGTCC | ATGTTGATGC | TGCAATCAAA | GAAGCGGAAA | ATAGGCACAG | GCTACATGAT | 3660 | |||||||||
3661 | ATTCAGAAAA | AAATGGAGAA | GAGCTCTTTT | GAGAAAGTTG | AACATCCAAT | TGTACATAGT | 3720 | |||||||||
3721 | TTTAAGAATC | TGGATGTCAC | AAAATATAAA | CTACTTCATG | AAGGTCCTCT | TACTTGGCGC | 3780 | |||||||||
3781 | CTTAATAAGC | AGAAAAATGT | AGAAATGCAT | GTTGTTCTTT | TAGAAGAATT | ATTGATACTC | 3840 | |||||||||
3841 | TTCCAAAAGC | AAGATGAAAA | ATACATATTA | AAATTTCACA | ATACAAACCT | CACTAGTGGT | 3900 | |||||||||
3901 | CGTGAAGACA | CCAAGATAAT | GCACAGTCCT | ATTTTACGAG | TTCATAATCT | TCTGATACGC | 3960 | |||||||||
3961 | AATAATGCTA | CAGATAAAAG | AAGTATATTT | TTAATATCAT | CATCTGAAAT | GCATGCAATG | 4020 | |||||||||
4021 | TATGAGTTTG | TTGCTGCCAC | TGCTTCTGAG | AAAAAGATCT | GGTGTCAGCA | TTTAACTAAA | 4080 | |||||||||
4081 | GCAGTGGAGC | AAAAGACTCA | AAGTGGCAAT | TTACTTAAAA | TGCATCAGGA | ACCAGTGCAA | 4140 | |||||||||
4141 | GTTACTCCAG | ATCCAGTAGT | AGCTAATGAA | GAACCACCTG | AAGAATCTGA | AGTTGAACCC | 4200 | |||||||||
4201 | AAAGAGCCTG | AAACATCAGT | GGAAACAACA | GAGGATTCTA | AAGCACCCCA | AGAAAGCAAT | 4260 | |||||||||
4261 | CCTCCTGAAG | CTCCCCAACC | ACCAGCAGAA | CCTGAATTAC | CTCCTCCTAG | TATTCCCCCT | 4320 | |||||||||
4321 | GATGACACTC | CTCAAAGAGC | TAAAAGAGTT | GTAGCAGATG | AGGAAAATGA | ATCTGAAAAA | 4380 | |||||||||
4381 | GAACCAAGTT | CACAGAAGAG | ACTTCAGCGT | ATAGAAATTC | TACAGATAAC | AGAGGCACCA | 4440 | |||||||||
4441 | CAGCTTATTG | AACCAAGTGA | AGTCATTGTT | AGTAGTGGTG | CCATTTGTGA | AACAGCTGAA | 4500 | |||||||||
4501 | CCTGTTCTAA | CACCTGTTGA | AAAGTTACGA | AGAAAGGATT | TAGAAATTGT | TAATGCAATG | 4560 | |||||||||
4561 | GAAGAAAAAG | GAAAGATATT | AGCTGAAATT | TTCCAGGTTC | CTTTAGAAGA | ATTTAAAGCA | 4620 | |||||||||
4621 | CCAAAAGAGA | TTCCCGTTGA | TGATAAAGAA | GTTACAGCAT | CAGCTTTAGT | AATGCATGCT | 4680 | |||||||||
4681 | GTTCAACAAG | CCACCAAGTT | GTCATCACTG | TTGAATGATG | GCTTGAATCT | TGTTGAAGAT | 4740 | |||||||||
4741 | GCACATGTCC | CTGAAGCTGC | TGCTGCATCT | CAGGAAGGCA | GTGCCAGTTT | TATGCCCTTA | 4800 | |||||||||
4801 | TCAGATTCCT | TAGAAAAATC | CAGTCCTTTT | AGTTATTTTT | TCAAACCTCA | AGGAGTATCA | 4860 | |||||||||
4861 | CACCACACTT | TATTGCCAGT | ATCAAATTCC | TTAAATTCCT | GTTTAGTTCA | GTTAATGGCT | 4920 | |||||||||
4921 | GTAATAGGAG | ATATGGAAGA | CGAGCGGAAG | CAACTACGGA | AAGAACTTGT | AAATTGTCGA | 4980 | |||||||||
4981 | GAACAAATTC | ACCAGCTTCA | TGAAAGTCAT | AGGCATTGTG | TTGTGCAGTC | TCAGTCACCT | 5040 | |||||||||
5041 | AGCACTCATT | CACGTCCCAG | CAGTTTTGTG | TCAGTTGCAT | CTACGACCTC | TGATGGTATA | 5100 | |||||||||
5101 | GCAGACTTTT | TTGAGCATCA | GCAGTTATTT | TCAGTATTAG | AAAAGACAGA | AGAAACAGCA | 5160 | |||||||||
5161 | GCTTCCGATT | CAGAGCCTGT | TCCTCAGGAA | TCCTCATCCA | AAGTGCTGTC | ATCTAGTCCA | 5220 | |||||||||
5221 | GTCAGTGAAA | GTGCACTTCC | ATCAGAAAGG | TTGCAACCAG | ATTCCAGTGC | ACCTGAAGAA | 5280 | |||||||||
5281 | ATTAGGACTT | GTGAGGAGCC | AACAGAGAAT | GCTTTGACTT | GTGATGTGCT | AAACTCTGAA | 5340 | |||||||||
5341 | GATATCACTA | GTGATGACAT | GTGCAAAACC | GAATTATCTC | CCATTTTGGA | ATCTGATATG | 5400 | |||||||||
5401 | GTGTGTAGGA | CAGTACAGGA | TGAGCCGAGT | GTGGATCCAG | TGTATCTC | 5448 |
Single Nucleotide Polymorphisms | ||||
3045 | A= 0.74 | G= 0.26 | ||
3223 | T= 0.57 | A= 0.43 | ||
3330 | G= 0.62 | T= 0.38 | ||
3427 | T= 0.66 | A= 0.34 | ||
3753 | A= 0.67 | G= 0.33 | ||
4287 | A= 0.75 | G= 0.25 |