| CSH_0496_complete Single nucleotide polymorphisms | ||||||||||||||||
| 1 | ATGGCCGCCA | TTGTCAGTGA | ATCATCAGGT | ATGAATGGAA | ACAAAAGAAG | CAAAACCAAT | 60 | |||||||||
| 61 | GATCTAAATA | TTACAACTGC | TGTGGCGTTA | CAAAGTTTAG | CTGAATTGGC | TCACCGAGAA | 120 | |||||||||
| 121 | TATCAAGCTG | GTGATTATGA | AAATGCTGAG | CGCCATTGCA | TGCAGTTATG | GAGGCAAGAT | 180 | |||||||||
| 181 | CCCACAAATA | CAGGAGTGTT | ATTGTTATTA | AGTTCAATCC | ATTTTCAGTG | TCGAAGACTT | 240 | |||||||||
| 241 | GATAAATCTG | CTCACTTTAG | TTCTTTAGCA | ATAAAACAAA | ATCCTATGTT | AGCAGAAGCT | 300 | |||||||||
| 301 | TATTCAAATC | TTGGAAATGT | ATATAAAGAG | AGAGGACAGC | TGCAAGAAGC | TCTAGAAAAT | 360 | |||||||||
| 361 | TACAGGCATG | CAGTTCGATT | AAAACCTGAT | TTTATTGATG | GCTATATTAA | TTTAGCTGCT | 420 | |||||||||
| 421 | GCTCTGGTTG | CTGCAGGAGA | CATGGAGCAA | GCTGTACAAG | CTTATGTGTC | TGCTTTGCAA | 480 | |||||||||
| 481 | TATAATCCTG | ACTTGTATTG | TGTTAGGAGT | GATTTAGGTA | ATCTTTTAAA | AGCCCTAGGA | 540 | |||||||||
| 541 | AGATTAGATG | AGGCTAAGGC | ATGTTATCTG | AAAGCTATTG | AAACATGCCC | AACATTTGCT | 600 | |||||||||
| 601 | GTTGCGTGGA | GTAATCTTGG | ATGCGTCTTC | AATGCTCAGG | GTGAAATATG | GTTGGCTATT | 660 | |||||||||
| 661 | CATCATTTTG | AAAAAGCTGT | TGCTCTTGAT | CCAAATTTCT | TAGATGCTTA | TATAAATTTG | 720 | |||||||||
| 721 | GGAAATGTAT | TAAAAGAAGC | TAGGATATTT | GACAGAGCTG | TGGCTGCTTA | CCTGAGGGCT | 780 | |||||||||
| 781 | TTGAATTTGA | ATCCTAGTAA | TGCTGTAGTA | CATGGTAATC | TTGCATGTGT | ATATTATGAA | 840 | |||||||||
| 841 | CAAGGGTTAA | TAGATTTGGC | TATTGACACT | TATCGACGAG | CTATTGAGTT | ACAACCAAAT | 900 | |||||||||
| 901 | TTTCCAGATG | CATATTGTAA | TTTAGCCAAT | GCCTTAAAAG | AGAAAGGACT | TGTGTCTGAA | 960 | |||||||||
| 961 | GCTGAGGATT | GTTATAACAC | AGCCCTTCGT | TTATGTCCAA | CTCATGCAGA | TTCTTTAAAT | 1020 | |||||||||
| 1021 | AACTTAGCAA | ATATAAAACG | GGAACAAGGC | TTTATAGAAG | AAGCAACACG | CTTATACTTG | 1080 | |||||||||
| 1081 | AAGGCCCTTG | AAGTATTTCC | AGAATTTGCT | GCTGCTCATT | CTAACCTCGC | TAGTGTTTTA | 1140 | |||||||||
| 1141 | CAACAGCAAG | GGAAATTAAA | TGAAGCCCTC | ATGCATTACA | AAGAAGCTAT | AAGAATTTCT | 1200 | |||||||||
| 1201 | CCAACTTTTG | CAGATGCTTA | TTCAAATATG | GGCAACACAC | TAAAAGAGAT | GGGTGATATT | 1260 | |||||||||
| 1261 | CAAGGAGCTT | TACAGTGCTA | TTCTCGAGCT | ATACAAATCA | ATCCTGCTTT | TGCAGATGCT | 1320 | |||||||||
| 1321 | CATAGTAACT | TAGCATCTAT | ACACAAAGAC | TCGGGAAGCA | TTCCAGAAGC | AATTGCATCA | 1380 | |||||||||
| 1381 | TACCGAACTG | CTTTAAAGTT | AAAGCCTGAT | TTCCCGGATG | CTTATTGTAA | CCTTGCTCAT | 1440 | |||||||||
| 1441 | TGTTTACAGA | TTGTTTGTGA | TTGGACTGAC | TATGAAGCTC | GTATGAAGAA | GCTTGTATCC | 1500 | |||||||||
| 1501 | ATTGTAGCTG | ACCAATTAGA | CAAGAATAGA | CTGCCCTCTG | TTCATCCTCA | TCACAGTATG | 1560 | |||||||||
| 1561 | CTCTATCCCT | TGTCTCATGA | TTTCAGGAAA | GCCATCGCTG | CTCGCCACGC | AAACCTTTGT | 1620 | |||||||||
| 1621 | CTAGAGAAGA | TTCAAGTTTT | GCATAAACCC | CCATACCAAC | ATCTCAAAGA | GTTGAAAAGT | 1680 | |||||||||
| 1681 | AAAGTGTTAA | AGATTGGATA | TGTGAGCTCT | GATTTTGGAA | ATCATCCTAC | ATCTCACCTC | 1740 | |||||||||
| 1741 | ATGCAAAGTG | TTCCTGGAAT | GCACAACAAA | GATAAAGTAG | AAATATTTTG | CTATGCTCTA | 1800 | |||||||||
| 1801 | AGTCCTGATG | ATGGAACAAC | ATTCCGATCC | AAAATTGCCC | AGGAATCACA | TCATTTTATT | 1860 | |||||||||
| 1861 | GATCTTTCAC | AGATTCCTTG | CAATGGCAAA | GCTGCTGACC | ACATCTTTAA | TGATGGCATA | 1920 | |||||||||
| 1921 | CATATCTTGG | TCAACATGAA | TGGCTACACT | AAAGGTGCAA | GGAATGAAAT | CTTTGCTCTA | 1980 | |||||||||
| 1981 | AGACCTGCAC | CCATCCAGGT | AATGTGGCTT | GGCTATCCAG | GAACAAGTGG | TGCACCTTTC | 2040 | |||||||||
| 2041 | ATGGACTATA | TTATCACTGA | TCGCATTACT | TCACCTCTTG | CTTTGGCTCA | CCAGTATTCT | 2100 | |||||||||
| 2101 | GAGAAATTAG | CATATATGCC | TGACACCTTC | TTTGTGGGTG | ATCATCGACA | AATGTTTCCC | 2160 | |||||||||
| 2161 | CATTTAATTG | AACGAGCTAT | CATTGATGAT | AAGGATTCTT | TAGGAAGAAA | ATCGGAAGTT | 2220 | |||||||||
| 2221 | CCTGATAATG | TGAGCATTGT | AAATGCTACA | GATTTATCTC | CCATCATTGA | AAAGGCAGAA | 2280 | |||||||||
| 2281 | GTAAAGAAAA | TTCGAGAAGT | TGCTGTAACA | ACCTCTTTAG | CATCTGAGAA | AGAGGAGCCT | 2340 | |||||||||
| 2341 | AAGATTGAAA | AAGTGGAGGT | TGTGAAGACA | GTGATAGAAC | TTCCAACCAT | TCCTGTGCAG | 2400 | |||||||||
| 2401 | AATATGATCA | GTTCTGGACA | GGTGCAGACT | TCAGTCAATG | GCATTGTTGT | GCAGAATGGA | 2460 | |||||||||
| 2461 | CTTGCAACCA | ATCAGATTAA | CAATAAAGCT | GCAACTGGAG | AAGAGGCACC | CAAAAGCATT | 2520 | |||||||||
| 2521 | TTAGTGACTT | CAAGACAACA | GTATGGCTTG | CCAGAAGATG | CCATTGTCTA | CTGTAACTTC | 2580 | |||||||||
| 2581 | AATCAGCTCT | ATAAAATAGA | TCCAGCAACT | TTACAAGTAT | GGGTTAATAT | ATTAAAGAGG | 2640 | |||||||||
| 2641 | GTTCCTAACG | GTGTCCTGTG | GTTGTTGAGG | TTTCCAGCAG | TTGGTGAGCC | CAACATTCTT | 2700 | |||||||||
| 2701 | GCATCTGCTA | CCCAGTTGGG | TTTGTCGCAG | AATCGAATAA | TTTTTTCAAA | TGTTGCTGCA | 2760 | |||||||||
| 2761 | AAAGAAGAGC | ACGTGCGTCG | TGGTCAGTTG | GCAGATCTCT | GTCTCGACAC | TCCCTTGTGC | 2820 | |||||||||
| 2821 | AATGGTCATA | CCACTGGCAT | GGATGTGTTA | TGGGCTGGAA | CACCCATGGT | TACTTTGGCT | 2880 | |||||||||
| 2881 | GGTGAAACAC | TTGCTTCGAG | AGTGGCCTCA | TCACAGCTCA | CCTGCCTTGG | GGTTCCTGAA | 2940 | |||||||||
| 2941 | CTCATAGCAC | GAACACGCCA | GGAGTATGAA | GATATAGCAG | TACGACTTGG | GACTGATAAG | 3000 | |||||||||
| 3001 | GAATACCTGA | AAGCCATTAG | AGGCAAAGTA | TGGGCTGCCA | GAACTGAAAG | CCCTCTCTTC | 3060 | |||||||||
| 3061 | AATGTGAAAA | CATATGCCTC | AAACTTGGAA | AGGTTATTCT | ATGCTATGTG | GGCGAGGTTT | 3120 | |||||||||
| 3121 | GAACAAGGAG | AGAAGCCCAA | TCACATTACA | GAACTT | 3156 | |||||||||||
| Single Nucleotide Polymorphisms | ||||
| 1128 | C= 0.51 | T= 0.49 | ||
| 3156 | T= 0.81 | C= 0.19 | ||