| CSH_0504_Complete Single nucleotide polymorphisms | ||||||||||||||||
| 1 | ATGAGCGCGT | TTTATACAGA | AATCGACACG | TGTGAACACT | TGTATCGGGG | TTACGGAGGA | 60 | |||||||||
| 61 | CGGGAGAATG | ATGACGAACA | GGGTCAGAAT | GCCTTGCGAG | GGAATTCCTC | GGATGCTGTC | 120 | |||||||||
| 121 | CAAAGTTTAT | GGCCTAAAGA | TGGCGGGCCG | GAACATAATC | CGTTCTACAG | CAACATCGAT | 180 | |||||||||
| 181 | TCCATGCCCG | ACATTCGACC | CAGGAGGAAA | TCCATTCCCT | TGGTTAGCGA | ACTGGTGCTA | 240 | |||||||||
| 241 | AAGACGATGG | CGGCAACAAA | AAGGAACGCA | GGACTTACTT | CGGCTGTCCC | GCGTCAATCT | 300 | |||||||||
| 301 | CTTAATGACG | AGGAACTGAA | GACGCACGTG | TACAAGAAAA | CCCTCCAGGC | TCTGATCTAC | 360 | |||||||||
| 361 | CCGATCTCTA | GCACGACGCC | GCACAACTTC | CAGCCATGGA | CAGCTACCTC | GCCCACCTAC | 420 | |||||||||
| 421 | TGCTACGAGT | GCGAGGGGCT | GCTCTGGGGC | ATTGCCCGGC | AGGGAGTGCG | CTGCACTGAG | 480 | |||||||||
| 481 | TGCGGCGTCA | AGTGCCACGA | GAAGTGCAAG | GATCTGCTCA | ACGCTGACTG | CCTGCAGCGT | 540 | |||||||||
| 541 | GCGGCAGAGA | AAAGCTCCAA | GCACGGCGCA | GACGACAAAG | CTAACAACAT | CATAATGGCC | 600 | |||||||||
| 601 | ATGAAAGAAA | GGATGAAGAT | CAGGGAAAGA | GACAAACCAG | AAATCTTTGA | GCTTATCAGG | 660 | |||||||||
| 661 | ATGACCTTTT | CCATCGACCC | CGACACGCAT | ATCGACGCTC | TGCAACAGGG | CGAAGCTCAA | 720 | |||||||||
| 721 | ATCATGGAAG | GGACCAGCAA | GTGGTCGGCA | AAGATCGCCA | TCACAGTGAT | CTCCGCGCAA | 780 | |||||||||
| 781 | GGGCTGATTG | CCAAGGACAA | GAGCGGAACA | AGCGATCCGT | ACGTGACGGT | CCAGGTGGGC | 840 | |||||||||
| 841 | AAGACTAAAA | AAAGGACACG | CACAATGCCT | CAGGACCTGA | ACCCAGTGTG | GCAAGAAAAG | 900 | |||||||||
| 901 | TTTTATTTTG | AGTGCCATAA | TTCCTCTGAT | CGAATCAAAG | TAAGAGTATG | GGACGAGGAC | 960 | |||||||||
| 961 | AATGACTTGA | AATCGAAGCT | CCGACAGAAG | TTAACTCGGG | AGTCTGACGA | CTTCTTAGGT | 1020 | |||||||||
| 1021 | CAAACGATCA | TCGAAGTGCG | CACATTGAGT | GGAGAGATGG | ACGTCTGGTA | CAATTTAGAA | 1080 | |||||||||
| 1081 | AAACGGACGG | ACAAATCTGC | TGTGTCTGGG | GCCATACGAT | TGCATATCAG | TGTAGAGATC | 1140 | |||||||||
| 1141 | AAGGGAGAAG | AGAAGGTCGC | TCCCTACCAT | GTACAATACA | CGTGCTTGCA | CGAAAACCTT | 1200 | |||||||||
| 1201 | TTCCATTACC | TCTGTGAGCA | AAATGAAAGT | GGCGATGTGA | AATTGCCAGA | TGCCAAAGGA | 1260 | |||||||||
| 1261 | GATGATGCTT | GGAAAGTATA | TTTTGACGAA | CCTGCTCAAG | ACATCGTCGA | CGAATTTGCA | 1320 | |||||||||
| 1321 | ATGCGGTACG | GCATTGAATC | CATCTATCAG | GCAATGACCC | ACTTCCACTG | CCTGTCGACC | 1380 | |||||||||
| 1381 | AAGTACATGT | GCCAGGGCGT | GCCCGCGGTC | ATGAGCACCT | TGCTGGCCAA | CATCAACGCC | 1440 | |||||||||
| 1441 | TACTACGCGC | ACACCGCTGC | CTCATCGGCC | GTATCTGCCT | GCGACAGGTT | TGCCGCATCC | 1500 | |||||||||
| 1501 | AACTTCGGGA | AAGAAAAATT | CGTCAAACTA | TTGGACCAAT | TACACAATTC | ACTTCGAATT | 1560 | |||||||||
| 1561 | GATTTATCAA | TGTATCGAAA | TAACTTTCCC | GCATCATCAC | CGGAGAAGCT | GCAGGACTTG | 1620 | |||||||||
| 1621 | AAGTCAACGG | TTGATCTTCT | TACCAGCATA | ACATTCTTCC | GAATGAAAGT | GCAAGAGCTG | 1680 | |||||||||
| 1681 | CCTAGCCCGC | CCCGCGCCAG | TACCGTGGTG | AAGGACTGTG | TGAAGGCTTG | CCTCCGCTCG | 1740 | |||||||||
| 1741 | ACGTACCAGT | TTCTGTTCGA | GAACTGCTAC | GACCTGTACG | GGCGCGAGTT | CCAGGTGGAG | 1800 | |||||||||
| 1801 | CCCCAGGACA | AGGGGCGCGA | AGCGGCGGAC | GACCACGGGC | CCAGCCTGCA | CAACCTCGAC | 1860 | |||||||||
| 1861 | TTCTGGCACA | AGCTCATCGC | GCTCATGGTG | TCTGTGATAG | AGGAGGACAG | GAACAGCTAC | 1920 | |||||||||
| 1921 | ACACCCGTTC | TCAACCAATT | TCCTCAGGAG | CTCAACTGCG | GGCAACTCAG | TGCAGCAACT | 1980 | |||||||||
| 1981 | ATGTGGAGTT | TGTTCGCAGT | TGACATGAAG | TATGCGTTAG | AAGAGCACGA | GCAACACAGG | 2040 | |||||||||
| 2041 | TTATGTAAAA | GTTCCGCGTA | TATGAACCTC | CACTTTAAAG | TAAAATGGTT | TTATAACAAT | 2100 | |||||||||
| 2101 | TATGTCAAAG | ATGTCCCTCC | ATACAAAGAA | ACAGTACCTG | AATACCCAGC | ATGGTTCGAA | 2160 | |||||||||
| 2161 | CCGTTTGTGA | TGCAATGGTT | GAACGAAAAT | GACGATGTCT | CCCTGGAATA | CCTCAACAGT | 2220 | |||||||||
| 2221 | GCCTTTTTGA | GAGATAAGAA | AGATGGGTTC | CTGCAAAGTT | CAGAACACGC | GTTGTTCTCC | 2280 | |||||||||
| 2281 | AACTCCGTGG | TCGACGTGTT | TACGCAGCTG | ACGCAATGTT | TCGACGTCAT | TAGCAAACTG | 2340 | |||||||||
| 2341 | GAGTGTCCAG | ACCCGGATTT | GGTAAAGCGC | TACATGAAAA | GATTCGCGAA | GACTATTGTG | 2400 | |||||||||
| 2401 | AAGGTGCTAA | CAGCTTATGC | AGACATAGTC | AAGAAAGAGT | TCCCAAATTT | CATCAGCCAG | 2460 | |||||||||
| 2461 | GAAAAGACGG | CTTGTATATT | AATGAACAAC | ATTCAACAAC | TGCGGGTTCA | GTTGGAAAAA | 2520 | |||||||||
| 2521 | ATGTTCGAAT | CTATGGGTGG | AGAAAAACTG | GATGATGAAG | CTGCGGGTAT | ACTCAACGAT | 2580 | |||||||||
| 2581 | TTACAGCAGG | CACTCAATAC | AGTACTCGAT | GACCTGAGCG | TTGTATTCGC | CAAAAGCCTG | 2640 | |||||||||
| 2641 | GAAGGCACGA | TCCGCCAGAG | TATGCAGGAG | CTGAGCGCCC | TGCTGTCTGC | GGTGAAGGGT | 2700 | |||||||||
| 2701 | ACGGGCCAGG | TCTCTATGAG | CCAAGTGTCG | CAGCGAAACG | AGGTGATGGC | GGAGGCCGAT | 2760 | |||||||||
| 2761 | CACGTGCTGC | ACCCGCTCAT | GGACATCCTG | GATGGAAAGC | TGTCCATGTT | CTACCAGGTC | 2820 | |||||||||
| 2821 | TGCGAGCGCA | CCGTGCTCAA | GCGACTTCTC | AAGGAACTGT | GGAAGATTGT | GATAACTACC | 2880 | |||||||||
| 2881 | ATGGAGAAAA | TCGTGGTTCT | GCCACCCATA | TCTGAAAAGA | ATGTGATACT | CCCTAACCTC | 2940 | |||||||||
| 2941 | CCCAATGCCA | AAATAGAAGA | TATGGGTCGC | TTATTAAGGA | ACCACGTCAC | TGCAACCACG | 3000 | |||||||||
| 3001 | AAGCTGCCTT | CAGCCTTGGG | TGTCATGGTC | GAAAAGAACT | TGACCCCGAA | ACAGTGCGCC | 3060 | |||||||||
| 3061 | GTCCTTGACG | TCGCGCTGGA | CACCATCAAG | CAGTACTTCC | ACGCCAACGG | CAACGGCCTG | 3120 | |||||||||
| 3121 | AAGAAGGCCT | TCCTTGACAA | GAGCGCAGAG | CTCCAGTCGC | TGCGTTACGC | CCTTTCTCTG | 3180 | |||||||||
| 3181 | TACACGCAGA | CGACGGATAC | GCTCATCAAG | ACCTTCGTCA | CAACACAGAC | CAAACAAGAC | 3240 | |||||||||
| 3241 | GCTCCCACGG | CGGAGGAAGG | CAGTGTCGGC | GAAGTATCCA | TCCAAGTCGA | CCTGTTCACT | 3300 | |||||||||
| 3301 | CACCCCGGCA | CGGGAGAGCA | CAAGATCACA | GTTAAAGTCG | TCGCGGCCAA | CGACCTGAAA | 3360 | |||||||||
| 3361 | TGGCCCAGCA | CCAGTATGTT | CCGCCCATTT | GTGGAAGTCA | ACCTCATTGG | TCCGCACCTG | 3420 | |||||||||
| 3421 | AGTGACAAAC | GCAGAAAACA | CGCAACTAAA | TCCAAGAACA | ACAACTGGTC | GCCCAAATAC | 3480 | |||||||||
| 3481 | AACGAGACAT | TCCACTTCAT | TATAGGCAAC | GAGGAGGAGC | CGTCCTCGTT | TGAGCTGCAC | 3540 | |||||||||
| 3541 | ATCTGCGTGA | AGGACTACTG | CTTCGCGCGC | GAGGACAGGC | TGGTAGGCGT | CGCGGTTATG | 3600 | |||||||||
| 3601 | CAGCTGCGAG | ACATCATCGA | GCAAGGCAGC | TGCGCTTGTT | GGCTGCCACT | CGGTCGCAGG | 3660 | |||||||||
| 3661 | GTCAACATGG | ACGAGACCGG | ATGGACGGTT | CTGCGCATCC | TGTCGCAGCG | CACGAACGAC | 3720 | |||||||||
| 3721 | GAGGTGGCGA | GGGAATTCGT | CAAACTCAAG | TCCGAGGTCA | GGAACGACGA | GAACATCCCC | 3780 | |||||||||
| 3781 | GTTCAA | 3786 | ||||||||||||||
| Single Nucleotide Polymorphisms | ||||
| 50 | G= 0.85 | A= 0.15 | ||
| 57 | A= 0.85 | T= 0.15 | ||
| 1041 | C= 0.69 | A= 0.31 | ||
| 1050 | T= 0.62 | C= 0.38 | ||
| 1143 | G= 0.86 | T= 0.14 | ||