CSH_0507_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGAAGTACC | TAGGGGCTAT | AGCATTACTG | TTCTTTGCAG | TGGCAGGGGC | AACCCATGTG | 60 | |||||||||
61 | CCTGAACATA | CTCTTCGAGG | ACCCCGTTTC | GAGAAAAACA | AGCTGTACAA | GTACGACGTC | 120 | |||||||||
121 | GAATTTAACG | TGACAGCTGG | AGTGCTGGGC | CTGAGCAGTC | AGGTGTCCGC | TGCAGTCCTT | 180 | |||||||||
181 | CGAGCTGAAG | TCAGTCTTAA | TCCAAAGACT | GAAACACATT | TCGTTCTCAA | GATTGAAAAT | 240 | |||||||||
241 | GTATTCACGA | GTGACTCTGT | GAAGGCTATC | GATAACAAGT | ATGGATACGT | ACCTTTGAGG | 300 | |||||||||
301 | CCCAACAGAG | ATCTTGAGGA | CAGACTGTCT | TCAGCGATCA | CCTTCACTTT | AGAAAATGGA | 360 | |||||||||
361 | AAGGTAACAA | AATACACTCT | GTCACCAAAA | GACAATTTGC | GATCCAAGAA | GATAAAGAAG | 420 | |||||||||
421 | AGCATCTTGA | GAAGCTTGGA | AATGTACATT | CCTGAAAGTG | CTCTTCAAGA | ACTCGAGTCT | 480 | |||||||||
481 | TCCAAGAATA | ACATGAATGT | TCCAGTCACT | TACAATACAA | CTGAGGTTAC | AGAATTTGGT | 540 | |||||||||
541 | GTTCATACCA | CACAATATAT | GATAACTGCC | AGCCCTTACA | GCGAATTCCC | ACAAGAAAAT | 600 | |||||||||
601 | CTCGTTTATA | ACGTCAGTCG | ATCTGACAAC | TTCGAAGGTG | AAAGATATCC | TAGCTACAAA | 660 | |||||||||
661 | CTGCACCACA | ATTTCGGAAA | ACAAGGCTGC | TCTGAAGTCT | GCCGAAAAGA | CTGGAAAAGC | 720 | |||||||||
721 | AATGATTATA | GAGCTGGATG | CCCCATAGAA | TACGAACCAC | ACCAAAGTCC | GATCAAAACT | 780 | |||||||||
781 | TCTTTTACTC | ACCAGCAAGA | TCTCAGCGTT | GTTGGCAACA | CCATTAGTCC | AGACGTCATT | 840 | |||||||||
841 | CGAACCGTTG | AAGTTCACTT | CGCAAATATG | TATGACCAAG | ATATGGAAGT | GCTCTTCAGA | 900 | |||||||||
901 | TACCAAATGA | AAAGAACTCA | TTTTACTTCT | GGACAGCTTA | CCGAGCCATC | AGGCCAAACC | 960 | |||||||||
961 | ACTTACACAG | ACCTCTCTGA | TATGGAAGCT | GAAATAAATG | AGGAAGAAAT | TAATGAACTG | 1020 | |||||||||
1021 | TGTGACTACA | AAAAGACTGC | AGATTATATA | GTTTCTGCCA | AAAATCTTCT | TTCTGAAATC | 1080 | |||||||||
1081 | TCGAGACTGA | TGGTTGAAGG | AAAATTGGAA | AGCCACGAAT | CCACCCTCGT | TGGTGAAAAG | 1140 | |||||||||
1141 | GTCATTCTGT | TGAGAGATGT | CTTGTCGATG | CTGACTTCCG | ACGATTTGCT | TACTGTGTCC | 1200 | |||||||||
1201 | AAATCAATCA | AAACTACACA | GTATTTGCAG | CGTGCAACAG | ATGAAGAAAA | GGTAGCAAGG | 1260 | |||||||||
1261 | CAAATTTGGT | TGAATATTTT | ACCAGCTGTT | GGAACCAGTG | AATCCGTAAA | ATTCATCACG | 1320 | |||||||||
1321 | ACATACGTCC | AAGATTTTAA | TAATCTGCTC | AAATGGGAGG | TGAAAGATAT | CCTAGAGGCT | 1380 | |||||||||
1381 | CTACCACAAA | ATATTCATAT | GCCAACAGAA | GAGGACATCA | GAGAACTGAG | AGAGTTGACT | 1440 | |||||||||
1441 | CAGAACGTTG | CAAAGGATAG | TCACCATTTG | CATTCAGCTG | TATACCTCAC | TTTGGCAAGA | 1500 | |||||||||
1501 | GTTATTGGAA | AAGCATGTGG | CAACGTTCCC | ATCATCAGAA | GTCAACCAAA | GCAGCGTTCA | 1560 | |||||||||
1561 | TCGTGGTTTG | GACAATTCCG | GTCGAATCCC | GAAAGCATGA | CGTACAGTTC | AGCCACATGT | 1620 | |||||||||
1621 | CCAGAAGCTT | TAGTTTCTGA | AATAGTAGAG | GAAATAACTA | GGAAACTAAA | GAGCACACAC | 1680 | |||||||||
1681 | AAACCAGAAG | AAATAGCGAT | TTACATCGGA | GCCTTGTCTC | ACATTGGAAC | TGCCGAGGTT | 1740 | |||||||||
1741 | CTGCCAGTAA | TTACTGAATA | CGTTTATGGA | ACAGCTGATA | ATGTTCAAGA | CTCAAGCCTT | 1800 | |||||||||
1801 | AAATTCACAG | ACTTCATGAA | AACTATGGCA | CAATTTGCAC | TGCATAATAT | TGCTGGAAAA | 1860 | |||||||||
1861 | TATCCCGAGG | AAGTTCTCCA | AATTGTCTTG | CCTGTGTTCT | TCAATGAAAC | TGAAACACCT | 1920 | |||||||||
1921 | AAAGCGAGGA | ACGCTGCTTT | CGGAGTTCTT | ATCAGGTGCC | AACCACCCCT | CGATGTCCTG | 1980 | |||||||||
1981 | CAAAGGATTG | CGGCACGCTC | CTGGACCGAG | AAGAGCTATG | AAGTCGGTAG | CTACGTTACT | 2040 | |||||||||
2041 | TCTACGCTGG | AGACTTTCGG | AAACTCTTCA | CTTCCATGCA | TGCAACTCAC | GGCTGATCGC | 2100 | |||||||||
2101 | ATCGCGTTGA | TTATGCCACA | GATGAGAAGG | TTCGACATGG | GAATGCAACA | CGCCAAGAAC | 2160 | |||||||||
2161 | TACTACTGGA | GCTATTTTGA | CAGTCTCCGT | GAATTTGGTT | TGCAGAAACG | CTTTGAATAC | 2220 | |||||||||
2221 | ATCCCGAGCA | ATGAATCCTA | CGTACCCAGC | GTTTTTTACC | ACTCTCTTTC | GTATTCCATG | 2280 | |||||||||
2281 | GACAGTTTAA | CAGATATCAT | CTCTCAGATT | GCTATTAACA | GTGAAGGTTT | GACTCAAGAA | 2340 | |||||||||
2341 | AAGATCATGG | AAAAGATTAA | TGAATACTTT | AAAGTTTCAA | GCGTTCCAAC | AATTGAAGAT | 2400 | |||||||||
2401 | GAAGCTAGAG | TCTTTGGTGA | CGGAGAAAGT | GGACTGTCAT | TCATTAAACC | TCGTGTTCCT | 2460 | |||||||||
2461 | GAAGATCTAC | GATTTACTAT | TTATGGTAAA | ATGTTTTACC | AGAGCTCTTT | CTATTATTTC | 2520 | |||||||||
2521 | GATTCTACAA | CCTACCGCAA | AGCTAAAGAA | GATTTAAAGG | AAGTTTTTAC | GAAGTACTTG | 2580 | |||||||||
2581 | AAGAATGCAG | ACAGAACCCT | CAGTGGTTAT | TTGGTTAAAC | TTATGATCCC | ATCTATATAT | 2640 | |||||||||
2641 | CACACTGTAA | CCGTAGCTAA | GACCCTTCCA | TATCCAGTAG | AATTCCAAAT | GAGACACCCC | 2700 | |||||||||
2701 | ATTGTCTTGG | CACTCAATGT | AAAAGGAGAC | AGGGAGATAC | AAACAATCGA | TCACTTCAAC | 2760 | |||||||||
2761 | TTACAGCTTA | GACCTAGTGT | GTACCTGAGC | AAACTCATCA | CTCACCAGAT | AAAGAACTTG | 2820 | |||||||||
2821 | GGTGACTGCA | AGGAAATTGG | AGTTTACCAC | GAGCATAAGA | TAGCAGTATC | TTATCCTTTC | 2880 | |||||||||
2881 | GAAATTAAAT | ACGAAGGAGA | GAGAATCCCG | AATATAACAA | TCAAATATAA | GATTCCCCAC | 2940 | |||||||||
2941 | TCTCAAAACA | GAATCTTGGC | CTATTTCACT | GAAGCCGGAA | CTTATGCTGG | AAAGAAAGAA | 3000 | |||||||||
3001 | CCCGAGAGAC | TGCCTTCATC | TATGAACAGA | GAGCCAATTA | GGACTCTTCC | TAGTCCTTTC | 3060 | |||||||||
3061 | AAGTTTGAGA | AGGAACTGGA | TATTGTAGGT | GTTCCACCTG | TCCTTGTTGA | GTTCCACACA | 3120 | |||||||||
3121 | GAAGATATGA | ATATTTTCAG | AGAAAAACTT | CCAAGAACTC | CTTATGAGGT | CGTAGATCTT | 3180 | |||||||||
3181 | GCAGTCAGAA | GGATCCTGAA | TGCTGGATGG | AGGCACAAAT | CTGTAAACAT | CACATTCTTA | 3240 | |||||||||
3241 | GAGAACAGGT | CTCTTTGGAG | CAAAGAAACC | GAGGTAACTT | TCGACGTCAA | ATATCTTCGA | 3300 | |||||||||
3301 | CAACACATTC | CAAGCTTGTC | AAAATACATG | GATTCAGCTG | AAAATGAAAA | TTGGAACGAG | 3360 | |||||||||
3361 | CATCGGTCTA | GAGATTCTTC | TCAGAAACAA | CCAAGCTGGC | AACATTCCGA | AAACGAAGAC | 3420 | |||||||||
3421 | GAAGACTGGA | CCAAATACTT | GAAACCATTT | ATAATCAATA | AGTATGATGA | TCCTTCTGTT | 3480 | |||||||||
3481 | CTTACTAAAA | CAGCAAGAGA | TGCCGCAAGA | ATTCTGAACT | ACTATCTTCC | TCATATGAGC | 3540 | |||||||||
3541 | CACGTACTGA | ACGTCAGCGT | AGAAACAGCA | CCTCAACACA | GCCAAGCCTA | TTTCCGAATG | 3600 | |||||||||
3601 | GAGTACAACC | ATACATACAG | CAAGAGTTTG | CATTCAGTTC | ACATTGACAC | TGTGGCACGA | 3660 | |||||||||
3661 | CTTAAAGACA | ACGAACGTCC | CTATGAAATG | AGCCTTGATC | ATTTGATGGG | ATTCTGGCAC | 3720 | |||||||||
3721 | TATCCGGATG | AATTCACTTA | CGACAGGGGA | TATGGCAGAC | AACAAGCTGG | GTTCATAACC | 3780 | |||||||||
3781 | GCTTTCGATT | GGCCACAAGG | AGAAGATGTA | TGCCGATGGG | AAAAAATGGG | AATCGCTGCT | 3840 | |||||||||
3841 | AAGGGTCACA | TGAAATATGT | ATCCAACAAG | GAAATACTGG | AAGATGAATT | CGTAAACAGA | 3900 | |||||||||
3901 | GTCGATGACA | AGTACTTCTT | GCCTGAAAAC | CATGAACAAT | GCTTAGAGGA | TGTAAGAAGT | 3960 | |||||||||
3961 | GGAATGCCTC | TGTCAGAGGA | CTGTGTTAAA | GCTATTCGAG | AACTATCCAT | CTACAACAAG | 4020 | |||||||||
4021 | CTCAAGATGT | ACATCTCATG | GAAAGAGGAC | TTACCAACAG | CTCTGAAACA | ATTCTTCCGA | 4080 | |||||||||
4081 | AGAGCAGACA | TTTACTTGAA | ACATATTTTC | TTTGAGCACT | TGAATGTCAC | TGAAGGAGGA | 4140 | |||||||||
4141 | CACCTGAATA | AGGGCATCGA | AGTTAACCTG | TATTACATCG | ATAAAATGGT | CGATGAACCA | 4200 | |||||||||
4201 | GTTGTTGACG | TAGAAATTCT | GAAATCATCG | GAAAGCGTTA | TGCTAGAAAG | AGTTCCAGTA | 4260 | |||||||||
4261 | CAGGGTATCC | AGCCTTTGTC | AAGTGTTTAC | AACATCTATG | AAAACTACCT | TTTGGAAGTC | 4320 | |||||||||
4321 | ACGAACAACA | CATATCCCCC | ATCCTGCACA | GTCACAGAAA | AGTACATAAA | TACTTATGAT | 4380 | |||||||||
4381 | ATGGTGACCT | ACCCATTTGA | ATCCACAGAC | TGCCACTATG | TGCTTTCCAC | TCATTGCTCC | 4440 | |||||||||
4441 | AAGAGGAAGA | ACTTTGCAGT | TATATTACAT | GGCAAACAGG | AAATTTATAT | CTATGTGGGA | 4500 | |||||||||
4501 | GCAAACACCG | TGATCCTGAC | TCCAAAGAGA | GCGCCCAGAG | ATCATTACGC | TGTCAAGTTC | 4560 | |||||||||
4561 | AATGGTGTAC | TACACAAGAT | AAAGGATTCA | TTCTTGCTGG | ATCCAGAAAA | CGAAATCTAT | 4620 | |||||||||
4621 | GTTTATACTG | TAAGATATGA | AAGGAATCAC | GAACATATCA | AATTAGTCGC | CAAAAAAAGC | 4680 | |||||||||
4681 | AGGTATCATG | GTGATTTACG | ACGGAAAGAT | CATCAAAGTT | ATGGTCGATC | CACGATACAA | 4740 | |||||||||
4741 | GGG | 4743 |
Single Nucleotide Polymorphisms | ||||
830 | C= 0.77 | T= 0.23 | ||
2151 | C= 0.75 | T= 0.25 | ||
2707 | T= 0.84 | C= 0.16 | ||
2793 | A= 0.81 | G= 0.19 | ||
3079 | G= 0.73 | C= 0.27 | ||
3186 | C= 0.81 | T= 0.19 | ||
3414 | C= 0.75 | T= 0.25 | ||
3643 | A= 0.78 | G= 0.22 | ||
3659 | G= 0.79 | A= 0.21 | ||
3702 | T= 0.81 | C= 0.19 | ||
3834 | C= 0.72 | T= 0.28 | ||
4140 | A= 0.76 | G= 0.24 | ||
4171 | T= 0.76 | G= 0.24 | ||
4272 | G= 0.74 | A= 0.26 | ||
4656 | T= 0.85 | C= 0.15 | ||
4709 | A= 0.70 | T= 0.30 |