CSH_0508_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGAGGTTCC | TGATACCGTT | AGCGCTGTTA | ATCCTTGCTG | TGGCTGAGGC | CCACCACACG | 60 | |||||||||
61 | CGAGAGCATA | CACTACGTGG | TCCACGTTTC | AGCATCGGAA | ACCTGCACGT | GTTTGATGTC | 120 | |||||||||
121 | GAACTGAACG | TGACGTCAGG | ATTATGGGGT | CTGAGCGAGC | AGGTTTCAAA | GTCAGCTTTT | 180 | |||||||||
181 | AAAGCCGAAC | TCCAAATATA | TGCCAAAAAT | GAGAAGGAAT | GCATTCTCAG | GCTTAAAAAT | 240 | |||||||||
241 | GTATATACCA | GCGATTCCGT | GGAAGCTGTT | GAGGGAACAG | ATGGTGATGT | CCTTCTGCAC | 300 | |||||||||
301 | AGGAACAGAA | AACTGGAAGA | AAGGCTGTCT | TCTCCAATTA | AATTCACCAT | GGAGAATGGA | 360 | |||||||||
361 | GAGGTCACCA | GCTATACTCT | TTCGCCCAAC | GAAAACCTGG | AGTCTAAGAA | GATTAAAAAG | 420 | |||||||||
421 | AGTATCCTGC | GCAGCTTGGA | AATGTATGTT | CCAGAATCTG | CTCACGTGCA | AATAGAATCC | 480 | |||||||||
481 | AACACCAGAA | TGAAGATACC | AGTTACTTAT | AATGTTACTC | AGAACTCAGG | TTTGGGAGAG | 540 | |||||||||
541 | CACACAACTC | ATTACCTAAT | AACCGTGAGC | CCCAACGTTG | AATTCCCTTA | CCACAACAAC | 600 | |||||||||
601 | GTCTACAATA | TTTCTCGATC | CGACGATTTC | GAAGGTGAGA | GATATCCCAG | CTACATATTC | 660 | |||||||||
661 | CATCACAATT | TCGAGTCTCA | GGGATGCCCT | CATGTCTGCA | GGATGCAACG | GGAGAATAAC | 720 | |||||||||
721 | GAATACGGAT | CGGGATGCCC | AGTTGGCTAT | GAACCATACC | AAAGCCCAAT | GAAGACATAC | 780 | |||||||||
781 | GTCCACCATC | AGCACCATCT | TACCCTCGAA | AGTGGTGTCA | TGACTCCAGA | AATCATTGAG | 840 | |||||||||
841 | AGCAAGGAGG | TCCATACTGC | CAAGATGTAC | GACCAAGATA | TGAGCGTACT | GATAGAGGTA | 900 | |||||||||
901 | AATCTGAGAA | AAATTGGATA | CAGCAAAAGA | ACTATTGAAG | AACCATCAGG | ACACATCAAC | 960 | |||||||||
961 | ACATACACCG | ATCTTAATGA | ACAAGAACCT | GAAATTAACA | AGTTAGAAAT | TGAGGAACAA | 1020 | |||||||||
1021 | TGTGCATATA | AAAACTCCAG | GGAAGCTATG | GAAGTTGTCA | AAATCTTGTT | GCATGAAATC | 1080 | |||||||||
1081 | GCCCAAATAA | TAGTTAGAGG | AGATTTAGAA | AATACACAAA | CCACGATCAT | TGGAGAGAAA | 1140 | |||||||||
1141 | ATCATGTTGC | TGAAGAATGC | TCTAACAAAA | CTCGAAGTGA | GTGACTTACA | GACAGTTGCT | 1200 | |||||||||
1201 | GGAGAAATTA | AAAGGCTGGG | ATCTCTTCCA | TCGGCTTCAG | AAGAAGAAAA | AGTAATGAGG | 1260 | |||||||||
1261 | CAAATCTGGA | TGGACATGCT | TCCAACAATT | GGAACTGAAA | ATGCTGTAAC | ATTCATTGTC | 1320 | |||||||||
1321 | AAGTACATCA | AAGAAAATCT | TGGACGAGAA | CTCTTGGCAT | GGGAGGCTAA | GGAAATTCTT | 1380 | |||||||||
1381 | GAGGCTTTGC | CCCAGAATAT | CAACACTCCA | TCTGAGAAGA | ACATTAAAGA | ACTTCATACT | 1440 | |||||||||
1441 | CTCTTGACAC | TATCGAAAGT | TAAGAATCAT | CATCTTTTGC | ATTCTGCTGC | GTACACCTGT | 1500 | |||||||||
1501 | CTTGGAAGAG | TGATTGGCGA | AATCTGCAAT | GGCACTCAGA | CCGAAGAAAG | CAGGATGTGG | 1560 | |||||||||
1561 | TTTCAAAAGT | CTCCTGAAAG | ACATCAGAGA | CAACACAGCA | TCAGAAACAG | CGATTATGAT | 1620 | |||||||||
1621 | TCAGAAGAGT | GCCCAGAACA | ATTAGTATCA | GATATAGTTA | AGGAAATTAC | AGACAAGCTA | 1680 | |||||||||
1681 | AGAAGTACCA | AAAATAAAGG | AGAAATTATC | ATCTACCTTG | AAACTTTAGC | CCTTATTGGA | 1740 | |||||||||
1741 | GTTCCAGAAG | TCCTTCCAAC | TATTGCTGAA | TATGCATACG | GTACTGCTGA | GAACATTCAA | 1800 | |||||||||
1801 | GATTTTACTC | CATCCTATTA | CGAATTTGTA | AAAACAGCTT | CAGTGTTCAC | TCTGCACAGA | 1860 | |||||||||
1861 | ATGGTTATGA | AACATCCCGT | AATGATTCTG | GAAACCGTTA | AACCATTGTT | CTTCAACGAA | 1920 | |||||||||
1921 | ACTGAAACTC | CTAAACTCAG | AAACGCTGCC | TTTGGAGTTC | TCATCAGATG | TCAGCCATCT | 1980 | |||||||||
1981 | GTAGAAGTAT | TACAGCATGT | AGCAGTACTT | TCCTGGAAGG | AAAAAAGCAA | CGAAGTCGGC | 2040 | |||||||||
2041 | AGTTATGTAA | CTTCTACTTT | GGACACTTTT | GGAAATGCCA | CACTTCCTTG | CTTTATACCC | 2100 | |||||||||
2101 | ACCTCTCGCC | GCATACAAGA | AGTGATGCCT | ATGGTGAAGA | GGTTCGACAT | CGGAGTTCAG | 2160 | |||||||||
2161 | CATGCAAAGA | ACCTCTTATG | GAGCTATTTT | GATGATGTTC | GAGAATTTGG | CTTGAAAGGA | 2220 | |||||||||
2221 | CGTTTATCAT | ACACTCCAAG | CAACGAATCA | GTAATTCCCA | GTGCTGTCTA | CCAAGCTCTT | 2280 | |||||||||
2281 | TCATACTCTA | TGGACAGTCT | AACTGACACT | CTTATCCAAA | GTGCTCTACA | TGTTCAAGGT | 2340 | |||||||||
2341 | TTGACGCAAA | GGCATATTAT | CGAATACATT | GATAGGAGCA | TCTTGGGGAT | AGAGTCTCCA | 2400 | |||||||||
2401 | GAAACTATTT | CCACATCAAA | AGAACATGAA | ATCTTTGGAG | AGGCTAAACT | CGTAGAACGC | 2460 | |||||||||
2461 | ATCCCAGATG | AACTGAGACT | TACCATTTAT | AAAAAGATGT | TCTATAGCTC | TGCTTTCTAC | 2520 | |||||||||
2521 | TACCTGGACT | TGCAGAACAT | AAGAATCCAA | GTTGGCACCT | TAAAGGAGTA | TCTCACAGCT | 2580 | |||||||||
2581 | TACCTGACAA | AAACTTCATA | CGATTACTCT | GGACACCTGG | TGAAAGTTTA | CTTGCCATCT | 2640 | |||||||||
2641 | TCCTTCCATA | CCGAGACCAT | TGCTAAAATA | TTGCCCTATC | CGGTCGAATT | CCAGATGATG | 2700 | |||||||||
2701 | CAGCCAGTTG | TTTTGGCCCT | GAAGGTCAAA | TCTTTGGCCA | GAAATCCATC | TCTCGCCAAC | 2760 | |||||||||
2761 | TTCCACTTCT | TTATCAGACC | CAGTGTATAC | CTTTCCAAAC | TTTTCGTAAA | CCACCTAAAG | 2820 | |||||||||
2821 | AATGTTGGAG | ACTGCAAGGA | TATCGGTGTT | TACCACGAGC | ACAAGCTAGC | TGTTTCATAC | 2880 | |||||||||
2881 | CCACTTGAGG | TGAAATTCAC | AGTTAGAAGT | CTGAAGGACA | TAACTGTCAG | CTACAAGGTG | 2940 | |||||||||
2941 | CCTGAACTAC | CAAAAAGGAT | TCTATACTAT | TTCTCCGAGT | CTGGAACCTA | CGCCGGAAAG | 3000 | |||||||||
3001 | AAATCTTTCA | GGATATTATC | GTCTTCTGAA | AACAGAGAAG | CCATAAGAAC | CATTCCATCT | 3060 | |||||||||
3061 | CCATTCCAGC | ATACACCCGA | ATTTAACGTT | ATTGGTGTAC | CTCCTATGCA | AATTCATATG | 3120 | |||||||||
3121 | CACACAGAAG | ACATTGCTCT | AGTAACAGCA | ACTACACACA | GAACTCCACT | CGAAGCTTTA | 3180 | |||||||||
3181 | GATTTTGCTG | TCAAAAGAAT | ACTGAATGCA | GGTTGGAGGT | ACAAGGCAGT | AAACATTACA | 3240 | |||||||||
3241 | ATGAGAGATG | ATTCTTCACT | ATGGCCAAGA | GACACAGAAG | TGACTTTCAA | TATCCACTAT | 3300 | |||||||||
3301 | GACCGCACTC | ATGTCACCAC | TGAAAAAGCT | AAGATGACCT | TAAAACAAAG | GGCTGTTAAA | 3360 | |||||||||
3361 | GACGAACCGT | CAGACGATGA | GTGGGTGACG | ACAGAATTAC | CCGAGCCCCA | GTGGAACACG | 3420 | |||||||||
3421 | GAAAGTTCTC | CACAGTCATG | GCCATGGAAC | TGGAGAAAGG | ATAGTAACGA | TGACAATACA | 3480 | |||||||||
3481 | GGTGACGATT | GGTCTAGTGA | CTGGACAAAC | GACATCGTGA | AGAACAAGAA | ATATTCTTCG | 3540 | |||||||||
3541 | TTCATCGATC | AAGCTAGGAA | AAACGTTCAC | AAACTCACGA | GGAAACCACA | CATCACTCAT | 3600 | |||||||||
3601 | GAACTGAAGA | TCGAAATCGA | GACTAAGCCC | GTTCGCAGCA | ACGCATACGT | CAAAATAGAG | 3660 | |||||||||
3661 | TACAACCACA | CTTATAGCGA | AAATCTATAT | TCAGTTTACG | TAGATGCAGC | ACTGAAAATG | 3720 | |||||||||
3721 | CCGAAGGATC | GTGTTCCTCG | AAAGTTAAGC | ATTCTTCATG | TAATGGAATT | CTTTGGAAAA | 3780 | |||||||||
3781 | CCTGACGAGT | TCCAGTACGA | TGCACACAAT | GATGAACACA | AGGCCCTGTT | TATTTCAGCT | 3840 | |||||||||
3841 | CTTCGAACCA | AGTCACTTGA | AAGAGACGAT | CCATGGAGGG | ACATTGATGT | TATTGCGGGA | 3900 | |||||||||
3901 | GGAATACTTT | ACTATGAAAC | TCTGGACACT | GTACTGAACA | AGGAACTGCA | GAACAAGATT | 3960 | |||||||||
3961 | GACCGCAAAT | ACTTCTTGCC | TGAAACCCAC | GATGAATGTA | TTCAAGACGT | TAAAGACGGA | 4020 | |||||||||
4021 | CACGCTATGT | CAGAGAACTG | TGTCAAAGCC | TTGAGAGAAA | GATCCATCTA | CAACAAGCTG | 4080 | |||||||||
4081 | AGAATAGCAC | TTCTGTGGAA | CAAGGACCTT | CCAATTGGCA | TCAAACACGC | AGCCCGTAAA | 4140 | |||||||||
4141 | CTGGATACCT | TTTTCAAACA | TGTCTACTAT | AAACACATGA | CAATCAAGGA | CGAGAATAAC | 4200 | |||||||||
4201 | AGCGAAAACA | AGATCCTCAT | CAGTCTGGAC | CACATTGACA | AACTCACCGA | CAAACCAGTG | 4260 | |||||||||
4261 | TGCGATATCA | CCATTCACAA | GCCTGAAGAG | ACGATCGAGT | TGAGAAGAGT | GGAAACTTTA | 4320 | |||||||||
4321 | GGATACGCCT | TAGACGACCC | ACTCTCCAGT | GTCCATGATG | TTCTTGGAGT | AGATTATATG | 4380 | |||||||||
4381 | GTACTCACTA | ACAATACCTA | CCCACCTGTC | TGTGTAATGA | TGAAAAAGTA | CGTAAGAACC | 4440 | |||||||||
4441 | TTTGATCTGA | AGAGTTACCC | CATCAGACTT | GACCACTGCA | GCTACGTCCT | TGCTACTCAC | 4500 | |||||||||
4501 | TGCTCTAATT | ACAAGAACTT | CGCCATCACT | ACCAAGATTT | TGTCCCCTGA | AGATGGCACT | 4560 | |||||||||
4561 | AAGGAAATCT | ACATCCATGT | CGGACCACAT | ACAGTAATCT | TAACTCCCAA | GAAAGGAGAG | 4620 | |||||||||
4621 | GAATACGTGA | TGAAGTATGA | TAACCGTGAT | TATACTATCA | CTGATGCAAT | GGTGTTCAAT | 4680 | |||||||||
4681 | GAAGACACTG | CAGAAATCTA | TGTTTATACT | GAAATTTTCT | CGCCCAGTCA | CAAACATCTC | 4740 | |||||||||
4741 | AATGTTGAAG | CCAAAAAGGC | AGGAATTAAA | GTTGTCTACG | ACGGTTGGAA | CGTTAAAGTC | 4800 | |||||||||
4801 | CAGGTTCATC | CACGATACAA | GGGTGAAATG | TGTGGTCTCT | GCAGTGAATT | TGATGGTGAT | 4860 | |||||||||
4861 | ATACTTAGAG | AATATAGAGG | ATTAGATAGG | TGTTTATACT | CGCACCCTGA | TGACTTTGTC | 4920 | |||||||||
4921 | AACAGTGCTA | TTACCAACCG | AGACACCTGC | AGAAAACAAC | CTATCTATCC | ATACATTTGT | 4980 | |||||||||
4981 | GAACATGAAG | AGAGAACCAT | TCACATGGGC | TGGAAACGAG | AAGGCGCTGG | TAAAGAATAC | 5040 | |||||||||
5041 | GAACCATCTA | CTAAGAGAAA | TGTCGTGATT | TCCAAGGGCA | ACGAGATCTG | TTTCTCAGTT | 5100 | |||||||||
5101 | CGTCCAGTTC | CTGTTTGCGA | GAAAAATGCC | AAACCTGTCG | AAACCCGAAC | AGAGATGATT | 5160 | |||||||||
5161 | GGTTTCCACT | GTTTGCCAAA | GCGAGATATT | ACAGCCAGGA | GAATGGTTTC | TGAAGCTAAG | 5220 | |||||||||
5221 | AGGAGATCGC | TGGGTGAAAT | AGAAAACAAG | AGTGTTGACT | ATGAAGAAGA | CGTAGAAATA | 5280 | |||||||||
5281 | GCGAAAATGT | GTTCAGAA | 5298 |
Single Nucleotide Polymorphisms | ||||
19 | T= 0.73 | G= 0.27 | ||
180 | T= 0.74 | C= 0.26 | ||
231 | G= 0.75 | A= 0.25 | ||
1626 | A= 0.62 | C= 0.38 | ||
1731 | C= 0.67 | T= 0.33 | ||
1815 | C= 0.80 | T= 0.20 | ||
2334 | T= 0.60 | C= 0.40 | ||
2346 | G= 0.58 | A= 0.42 | ||
3783 | T= 0.65 | C= 0.35 | ||
4128 | C= 0.57 | T= 0.43 | ||
5273 | T= 0.65 | C= 0.35 |