CSH_0513_Complete Single nucleotide polymorphisms | ||||||||||||||||
1 | ATGGCGTGGT | CTCCCTCGGG | TTGGATCCTG | AGCCTGGAGT | CGGGCGCAGT | CAAAATGATC | 60 | |||||||||
61 | GGCCTCGCTC | TTACCTTCGT | CGCACTCGCT | GCATCTGCAG | CAGCCTCAGG | CTACATCGAC | 120 | |||||||||
121 | GGTCGCGAGT | ACGTGTACCA | GTACACGGGC | TTCATCTACA | CGGGCTACCC | CCGGATCAAA | 180 | |||||||||
181 | CCCCAGGAGG | CCGGCTACAC | CTACAACACC | AGGCTCAGGA | TCCAACCCGA | GGGAGACCAC | 240 | |||||||||
241 | GCCATCTTCA | AGATCGAAGA | TTCCCGCAAG | GCCAAGTTCA | ATGGAGAATT | TGAAGACGTC | 300 | |||||||||
301 | ACGAAGGCGA | GGCACAACTT | TGAGGAACTT | CCGGACCACG | CCGAATTCCT | CACCAGGCCT | 360 | |||||||||
361 | TTCCGAGTCT | ACAGAAAGAA | CGGAGTCGTG | ACCCACTTCG | AGGTGACGCA | GGACGAACCC | 420 | |||||||||
421 | AGTTTCTCCG | TCAACCTGAA | GCGTGGCATC | GCGTCCCTCT | TCAACCTGAA | CTTCGACCAC | 480 | |||||||||
481 | GTCGAGTCCG | GCGGATCTAC | CGAGGACAAC | GACATCCAGA | AGCCTGACCC | TGATGCACAC | 540 | |||||||||
541 | TACTACAAGG | TCTACGAGGA | CAGCGTTCTG | GGCGAATGCG | AGACGGCCTA | CGTCATCGAA | 600 | |||||||||
601 | CACCACCCCT | ACGACCGCAC | CAACAACATC | GTCCTGAACG | TGACCAAGGT | CCGAAACTTC | 660 | |||||||||
661 | CACAAGTGCA | ACACCAGGCC | CAACGAGGTC | TACTCCGTCT | TCTACGGACA | CGAATGCGGA | 720 | |||||||||
721 | GAGGTCGACC | ACGAGAAATC | GCACACCTTG | CACGGAAATG | GACACTACCA | CTACTCCATC | 780 | |||||||||
781 | CGCGGGGACC | GACACCACTA | CGTCATCGAG | AAGATTCGAA | CGGAGTCTGA | CATGGCCTAC | 840 | |||||||||
841 | ACGCCTTATC | CTCTGGAGGG | ACAGACCGTC | TCGACCCTCA | TCAAGCGATC | GCTTTCCCTG | 900 | |||||||||
901 | ATCGAAGAGA | AAGCCGTGTC | CGAGCCCATT | CAGCTGTCCA | GCGACCTGGT | CGACCACGAC | 960 | |||||||||
961 | TCCCTGGTGT | ACGATTTCGA | TTACCAGAAG | GACTTCAGGG | ATCCCGTTGA | CCTCAAGAAA | 1020 | |||||||||
1021 | CCGCACTACC | TGTACCACTT | GACTGGAAGG | AAAGTGCCCT | TCAGCGACAT | CCGAAAGCAA | 1080 | |||||||||
1081 | GTGGAAGAAC | TCGTGGACGT | CTACCACGAT | GACACCTACG | CCGAGAAGAT | CAAGGACAAG | 1140 | |||||||||
1141 | AACTTCCCCG | CCAAATTCGT | CGAACTCCTG | AGGTCCGTGG | CCACCATCGG | TTACGATGAA | 1200 | |||||||||
1201 | ATCGATGATC | TCTACAAGGC | GTACGCCGAT | ATCCCCAGCA | CTGGAGCCAC | CGAGGAGCAG | 1260 | |||||||||
1261 | AAGCGATACA | GGACCCTGTT | CGTCGACACC | CTGGTGAACC | TTGGCACCAA | CCCGGCCTTC | 1320 | |||||||||
1321 | TTGTACGGAA | AGTACCTGAT | CGACAGCAAG | AAGGCGAGCA | AGTCGGAGGC | CGCGTACTTC | 1380 | |||||||||
1381 | GTGCAGCAGC | TGCAGTTCCA | CCTGAAGGAC | GCCAGCGAGA | CCCTTCTCGA | CCAGCTGCAG | 1440 | |||||||||
1441 | GAACTCTGCG | ACAGCGAGTA | CTTCAAGAAG | AACCCCGACT | TGCACGTGTC | CTGCGTCAAC | 1500 | |||||||||
1501 | ACCCTCAGCA | ACATCGTGTT | CGACCACTGC | GTTGTTCACT | ACCACCCCGA | CGGAGTTAGG | 1560 | |||||||||
1561 | GGGGGCAAGC | ACGAATGTCC | CTACGATGCG | GCCGTCAAAT | ATTTCAACTA | TATTGCTAGG | 1620 | |||||||||
1621 | CTGTACGAAC | AGACCAACAA | CGAAAAGCTG | AAGGGATACT | ACATTAAGGC | TGCCGGCAAC | 1680 | |||||||||
1681 | ATTGGAGTGA | AGGAAATTCT | GCCTTACATC | GAGCCTTACG | TGGAGGGACG | AGTCCATACT | 1740 | |||||||||
1741 | CACCTGTTCT | ACCGAGACAA | CGCCATCTGG | GCACTCATGA | ACGTGGGATA | CAGGTATCCT | 1800 | |||||||||
1801 | GAAAAGGTTC | GAGCCATGTT | GGTACCCCTG | CTCTTCAACC | GCACCGAGAA | CTATCAGCTG | 1860 | |||||||||
1861 | AGGTTGGCCG | CTTTCATCCT | GTTGCTTCAA | CACCGCCCCG | AGCTCTACGA | GATTGAGGGC | 1920 | |||||||||
1921 | GTGGCCAGGG | CTCTGAAGTA | CGATCCAGAC | GACCAAGTCA | GGTCCTTCGT | CTACAGCACT | 1980 | |||||||||
1981 | TTCCAGTCCG | TCGCCAACTC | TACTCACATC | TGCGACAGGC | GACTGTCTAA | GCAGGCCCAC | 2040 | |||||||||
2041 | TACGCCTTGA | GAATCTTGGA | AGATGTCCAC | CACGAATTCG | AACACTACGA | TTACAGTTAC | 2100 | |||||||||
2101 | TCTCAACACG | AATACTTTGC | CGGATACGAT | CACGATTACG | ATTTTGGAGG | TTCGACCCGC | 2160 | |||||||||
2161 | TTTGCCTACT | TCGCTAGTGA | CACCGGCTAC | ATCCCACGAA | CCGTGTACTT | GGGCCTGGAG | 2220 | |||||||||
2221 | GACTACATCG | GAGGCAAGTC | CATGCACACC | TTCGGCGTGG | GCGTGAAGCA | GTTCGGACTG | 2280 | |||||||||
2281 | GAGAAGTTCT | TCGACAGGCT | CTTCGGACCG | GAGGGATCCT | TCGGAAAGAG | GTCCGTGTTC | 2340 | |||||||||
2341 | GACCTGTTCA | AGAAGAAGTC | GAAGAGAGAC | GTCAGCGGGA | CGCAGAAGGA | GCTCAACGAG | 2400 | |||||||||
2401 | ATCAAGGGAA | AACTCGACTT | GCCAGTCCAC | GATTATGAGA | AAATCTTCGG | AGAGGTGTTC | 2460 | |||||||||
2461 | TTCAAGTACA | TGGGCAACCA | CCTCACGTCC | TACCAATTCG | ATGAAAAGAC | TTTCGAACAG | 2520 | |||||||||
2521 | TTCTTCAAAA | ATGGTCGCTT | CGTCATTCCC | AACATTCCCG | CTCTGTACCA | TAAGGTCCCT | 2580 | |||||||||
2581 | GCCTACGTGT | ACCAGCGTTT | CATGCTGTCC | GTCGACAAGT | TCTACGTCAT | CCCCACTGAG | 2640 | |||||||||
2641 | TCTGGCATCC | CACTCCTCTT | CGACTACAAG | CAGCCTGTCT | ACTACTACCA | CAAGAACGTA | 2700 | |||||||||
2701 | GAGTCCAGCA | TCAGGGTCGA | ACCCGGCTTC | TTCCCGGAAG | ACAGAGGTGG | ACAGTATCCA | 2760 | |||||||||
2761 | GACCACGTCA | AGGCTGAGAC | CGATGGACAC | TTTGCCTTGG | ACAAGAACCT | TTTCGCCTAC | 2820 | |||||||||
2821 | ATGGGTGTGG | TCATTCCCTT | CGATCAGGTG | ATCTTCGGCG | CTGGCATCAA | CCGACGCTCC | 2880 | |||||||||
2881 | ACTCTGTCCC | TGCCCCTCAA | GCTGAAATTC | GACCTCGTCG | TGAAGGAGAA | GCAGCTGAAG | 2940 | |||||||||
2941 | ACCCACTGGA | CACCCGTTGC | ACCCCACGAG | GTCTATCACT | TCAAGTACGA | GCCTTTCACC | 3000 | |||||||||
3001 | TTCTTCGACT | CCTACGCCAA | TTCCGTCCCT | CAGGTTCTTG | AAGATGGATA | CCACCCCGTC | 3060 | |||||||||
3061 | AGAAGGGTTC | ACAGGCACGA | GGTCGAGAAG | CACTTCTTCC | ACGACACCTT | CGGCGTTGGT | 3120 | |||||||||
3121 | TTCGACGTCA | AGGCCGACTA | CGAGAACGAG | TTCAACGACT | TCGGATCGTG | GGTAGACTTC | 3180 | |||||||||
3181 | TTCCTCAAGA | AGGACTTCCG | AGAGAAGTTC | TACTACCTCA | TGTCCAACCC | CAACTTCGAG | 3240 | |||||||||
3241 | CCCGTCCACG | TGGACGTGCG | CTTCAGCTAC | GCTGACCACG | ATGCCACCAA | AGAGGTGGAC | 3300 | |||||||||
3301 | ACCGACTTCA | CGTACCACTT | CCACGACGAC | AACTGGGTCA | TTCCCCACTT | CCCCGAGGAG | 3360 | |||||||||
3361 | AGCTTCGAAG | ACTTCGACCG | CCACAGGGAC | GACCGCGGCC | CCGTGGTCAC | GTGCGCCCTC | 3420 | |||||||||
3421 | AAGGGCAACG | TGGTCGCCCA | CGGAGACAAG | GAGAGGAAAA | TCCACGCCGT | CATCTCCTGG | 3480 | |||||||||
3481 | GCCAGGGACC | TGTACAGGAC | GTTCCATAAG | GTCAACTTCT | TCTACGAGAG | GACCCCGTTC | 3540 | |||||||||
3541 | ACGCCCCGGG | AGACGGAGGA | CTTCAAGGTT | TGTGGCAGCA | GCTATTTGAA | ATATCCCAAG | 3600 | |||||||||
3601 | TACGACTACC | TGAAGTTCGC | CACCTTGGAC | ACAGTGGACG | TGGACCACAC | CGTGAAGACC | 3660 | |||||||||
3661 | GAGCTGAAAG | TCCACTTCGG | AAAGAACTGC | AACGCCGACC | AGAAGTTCAA | GGTCCAGGGT | 3720 | |||||||||
3721 | CTGATCACCG | AGTCCGAGGA | GCAGCACGAG | TTCGAGAAAC | ACCGCGAGGA | ACCCGACACG | 3780 | |||||||||
3781 | CCGGAGCACT | ACAACCAGTA | CAGCCACTAC | TACCACGAGT | GCCTGAGGGA | GAGGGAACGA | 3840 | |||||||||
3841 | GGCATCAACT | ACGGAGAGAA | TTGCATGGAG | TATTTCGACC | TCATCACCAC | CCTCCACAAG | 3900 | |||||||||
3901 | TACACCTTCC | ACATCAAGCA | CGAGCACTTG | TCCGATGGCT | TCCTGAACAA | GACTTACCTA | 3960 | |||||||||
3961 | TTGGACCGTG | TCCTGAAGTT | CATGTTCTAC | ACTCACTCCG | ACCACAACGA | GATCGGCGTG | 4020 | |||||||||
4021 | CACAACCCAG | TGGACGAAGT | CCACCTCGAG | GCCAATTTCT | CCTCCAAGCT | GCCCGTCGCA | 4080 | |||||||||
4081 | GATGTCCGCG | TCCAGAAGCC | AACCTCCAAC | AGCAACTACT | ACAACGTCTA | CCTTCCCAAG | 4140 | |||||||||
4141 | TACGTCGGAT | TCAGCTCCTA | CCCCATGTTC | GAGGATGCCC | ACGTCAAGAA | CTCGTTCAGT | 4200 | |||||||||
4201 | GACCTGTTCT | GCAGTATCGA | GGGCGACGAA | GTCTTCACAT | TCGATCGCTT | CGAATATACC | 4260 | |||||||||
4261 | TTACCCCCTA | TCGACTGCTA | CAAGGTAGTG | GCCAGGGACT | GCTCCCCAAG | CGAATTCTTC | 4320 | |||||||||
4321 | ACCGTTCTGG | CAACGAAGAT | CAACCACCCC | AAATACCATA | AGGCTGTCAA | GGTGTTCCTG | 4380 | |||||||||
4381 | GGCGACCACA | AGGTAGAGGC | TCTCCCGGTG | TCTGACGACT | CCGGCATCAT | AATCCGCGTG | 4440 | |||||||||
4441 | GACGGTACCA | AAGTCGCCGT | GTCCTCCAAC | GAGCCCTACT | TGCACAAGGA | AGGAGATGAC | 4500 | |||||||||
4501 | CCCATCCCCG | TGTTCTACGT | CACTTTCAGA | GACTTCTACT | ACACCCTGCA | CTCCGAGAAG | 4560 | |||||||||
4561 | TACGGACTGA | TCGTGGAATA | TGACGGACAT | GCCGTTTTCG | TGCAAGTTTC | ACCGTACTAC | 4620 | |||||||||
4621 | CGCGCCAAGC | TGTGCGGCCT | GTGCGGCAAC | TACAACGGAC | AGAAGCACGA | CGGGGCCACC | 4680 | |||||||||
4681 | AACTCGGATG | GATGCCACTA | CGAGGACGAG | AAGGCGTACG | CCTACGCCTA | CAGCATCCCG | 4740 | |||||||||
4741 | TCGGACACCT | GCTCGGTGCC | GAGACCAGAC | CGTATCTGCC | CCGCAGAAGG | TGGATTTGGC | 4800 | |||||||||
4801 | TGCACCCGAC | TTCGAACCAA | AGTGCTCCAG | CTGACGACCG | GAAAAGTTCC | CCAGACTTGC | 4860 | |||||||||
4861 | TTCTCGACCG | CCCCCGTCAC | CGAATGCGCT | GAGCACTGCA | AATCCTCCGG | CACCGTGAGT | 4920 | |||||||||
4921 | CGAAAGGTGC | CTTTCCACTG | CCTGCCCGCG | AAGGACGATT | CCACGAAGGC | TCTGCTCCGG | 4980 | |||||||||
4981 | GAACAAGAGA | GGAGGGTGCT | CTACGAACTC | GGCAGGAAAA | GCAGGGACCA | CGAAGAAACC | 5040 | |||||||||
5041 | GTCGAAGTAC | CGGACCGATG | CTACAGGGAA | 5070 |
Single Nucleotide Polymorphisms | ||||
414 | C= 0.62 | T= 0.38 | ||
1002 | T= 0.55 | A= 0.45 | ||
1011 | C= 0.53 | T= 0.47 | ||
1030 | C= 0.55 | T= 0.45 | ||
1149 | C= 0.52 | A= 0.48 | ||
1914 | T= 0.87 | C= 0.13 | ||
2025 | G= 0.81 | A= 0.19 | ||
2436 | T= 0.86 | C= 0.14 | ||
2556 | T= 0.88 | C= 0.12 | ||
2580 | T= 0.84 | G= 0.16 | ||
3384 | C= 0.88 | G= 0.12 | ||
3507 | T= 0.90 | C= 0.10 | ||
3612 | G= 0.55 | T= 0.45 | ||
4291 | G= 0.51 | T= 0.49 | ||
4611 | A= 0.86 | C= 0.14 | ||
4785 | A= 0.51 | C= 0.49 |