| CSH_0514_Complete Single nucleotide polymorphisms | ||||||||||||||||
| 1 | ATGAGACTTA | TAAAAGATAA | GGACGGAAAA | ATACCCCTTT | TTCTCGCTGC | AGAAATAGAC | 60 | |||||||||
| 61 | AATAACAGCA | TGTGCCGAGA | ACTACTCACA | GCTTTAAGTA | AAGAACAACT | CAAGATTAAA | 120 | |||||||||
| 121 | ACTTCTGAGG | AGGGGGATAC | AGCTATTCAT | ATTGCCACTA | GACGAAAGAA | TGGTGAACTG | 180 | |||||||||
| 181 | CTGAGATTGC | TTCTAAACAG | TGGAGGCAAT | GTTGATGCAC | AGAACGATGA | AGGATTAACC | 240 | |||||||||
| 241 | CCTCTGCACA | TAGCATGTGA | ACAAGGAGAT | ACTGAGATTC | TTAAAGTATT | CTTTCAGTTC | 300 | |||||||||
| 301 | CGAGCAAATG | CTAATATCAA | CGATAACCAA | GATCGCACAC | CCATACATAT | AGCTGCAGAA | 360 | |||||||||
| 361 | AAGGGTTATA | GCGCTATTGT | TGAAACTTTG | GCAGATAAGT | TTAAAGCATC | TATATTCAAG | 420 | |||||||||
| 421 | AGGACAAAGG | ATGGAAGGAC | TCTAATGCAT | ATAGCGTCAG | AGTCTGGGCA | TCAAGAAACA | 480 | |||||||||
| 481 | GCACTGGTTT | TCTTGAAAAA | GGGCGTACCT | CTTCACATGT | CAAGCAAAAG | TGGAACAAAA | 540 | |||||||||
| 541 | GCTATTCACA | CGGCAGCAGC | ACATGGGTTT | GTGGAAGTTA | TAAGAAATTT | GCTTGAAAGA | 600 | |||||||||
| 601 | GGAGAAAATG | TCGATGCAAC | CACACCAGAA | AACTTTACAG | CTTTGCATCT | TGCAGTACAG | 660 | |||||||||
| 661 | GCTAATCAGC | CTGAGGTAGT | CGAGATATTA | CTCGGACACG | GAGCGAATGT | TCAAATGAAA | 720 | |||||||||
| 721 | GCGGGTAAAA | ATGGGGAAAC | CGCATTACAT | ATGGCTGCAG | GAGTAATTGA | CGGCCATAAG | 780 | |||||||||
| 781 | TGTGCAGAAC | TCATTATAAA | AAGTGGAGCT | GATGTGAACG | CAAGAAATGA | GGAAGGGGAA | 840 | |||||||||
| 841 | ACTCCTCTGC | ACAACGCTGC | TCGACACGGT | CAATTGAAAA | CTGTTACGCA | GCTGCTCGAA | 900 | |||||||||
| 901 | GATGGGGCTG | AGCTGGATAG | CTTGTCTAAA | AATGGAGAAA | GTGTCTTACA | CGTTACTGTT | 960 | |||||||||
| 961 | AAGAACTGCC | ATTATGAAAT | TGCGAAGAGT | GTAGTAGTCC | ATAAGAAAGA | TAATGTAACG | 1020 | |||||||||
| 1021 | GAAGATGAAC | TGATGGATTA | TGTTAATCTA | CCAAACAAAG | ATGGAGAGAC | TGCTACTCAC | 1080 | |||||||||
| 1081 | TATGCATCTT | CCATTAATAA | AGAACAAGTT | CACTACCCAA | CTGAAGATAA | AGACCTTATA | 1140 | |||||||||
| 1141 | GCGCTAATGC | TCCAAAATGG | TGGTAGTGTA | ACTACAGAAA | CTAAATCAAA | TCACGAAACT | 1200 | |||||||||
| 1201 | CCTATTCACT | ACTGCTGCAG | AGCAGGAAAT | GAAGATGTGG | TGAAAGAAAT | AATATCTAGA | 1260 | |||||||||
| 1261 | TTACCAGCAT | CTAAGTTACA | AATTGCGTGC | AATAAACAAG | CTGCAAACGG | TTGGTCCCCT | 1320 | |||||||||
| 1321 | TTACTTTATG | CTTGTGATTC | AGGTAATTAT | CATGTCGTTC | AACTTCTTCT | TCAAAACAGT | 1380 | |||||||||
| 1381 | GCCAGAGTTG | ACGTCTTTGA | CTGTGAAGGA | CGAGCAGGTC | TTCATCTTGC | TGCTGAACAT | 1440 | |||||||||
| 1441 | GGACACGCTG | ACGTCATTGA | AATCTTATTA | AATCATAAGG | CTTTTGTGAA | TGTGCGGACA | 1500 | |||||||||
| 1501 | AAAAAGGGTA | TGACACCCCT | GCACCATGCT | GCTGCGCAGG | GACATACGAA | TGTTGTGAAG | 1560 | |||||||||
| 1561 | CTCTTAGTGG | GAAAATATGG | AGCAGCCATC | GATGGTTTGA | CTCTGAGCAA | ACAGACTGCT | 1620 | |||||||||
| 1621 | CTCCATTTGG | CAGCTCATGA | AGGACGTTTT | GAAACATGTA | GAACTCTTTT | GGATATGAAA | 1680 | |||||||||
| 1681 | GCAGATCCTA | ATGCCACAGA | TAATAGAGGA | CAAACCCCAT | TACTACTGGC | TGCAGAGAAT | 1740 | |||||||||
| 1741 | GATCATTCTG | AAGTTGTCAA | ATTATTCCTC | CAGCTGAAGC | CTGATCTCGT | GACTATGGCG | 1800 | |||||||||
| 1801 | AGTGCGAGTG | GAATCACTTG | TGGACATATA | GCTGCAATGA | AAGGTAGTGT | AGCGGTAATT | 1860 | |||||||||
| 1861 | AAAGGACTGA | TGAAGTTTGA | TCCGAAGCTC | GTTACTACGG | CAAGAAGCAA | GAATAATGCT | 1920 | |||||||||
| 1921 | ACTGCTCTTC | ATCAAGCAGC | TTCAGGGGGA | AATGGTGAAG | TTGTGAAGGT | TCTATTAGAA | 1980 | |||||||||
| 1981 | GCTGGAGCGA | ATCCAACAGA | TGAAACAGAT | GATGGGTATA | CTGCTTTACA | CATAGCAGCG | 2040 | |||||||||
| 2041 | AAGCATGGAC | ATATTGAGGT | ACTTCATGCA | CTCAAATCAG | CCATGTCTTG | GAGATATGCA | 2100 | |||||||||
| 2101 | AGTAAAAAGA | CAGGTCTCAC | CGCTTTACAT | GTTGCAGCTA | GTTATGGGCA | AGAGGACTTT | 2160 | |||||||||
| 2161 | GTTAGAGAAA | TGCTAACACA | AGTGCCAGCC | ACAATAACTA | GTGAAAAACC | ATCTGACAAT | 2220 | |||||||||
| 2221 | CCTGAAGCTG | ACTACGGCTT | AACGCCTTTA | CATATGGCAG | CTCGTCATGG | CAGGGAAGAT | 2280 | |||||||||
| 2281 | GTAGTTAGAA | TGCTACTAAA | TAGTGCTGGT | GTTCAGGTAG | ATGCATCCAC | AACTGTTGAG | 2340 | |||||||||
| 2341 | GCAATAATGC | CCCTTCATTT | AGCGGCAAAA | GGAGGGCATT | TAGCTGTAGC | TGGTTTGATT | 2400 | |||||||||
| 2401 | TTGAGCCGAA | TAACGGACAA | ATTTCACTCA | GGGGATAAGA | AGGGGCGAAC | TCCACTTCAT | 2460 | |||||||||
| 2461 | ATGGCAGCAG | CAAATGGCCA | TGAAGATATT | GTTCGTCTTC | TTCTGGGTCA | AGGGGCTGAT | 2520 | |||||||||
| 2521 | ATCAATGCAG | CAGATAACAA | TGGCTGGACA | GCTCTGCATT | ATGCAGCTAA | ACAAGGATAC | 2580 | |||||||||
| 2581 | TTAGAAATGA | TTCACCTTCT | CATAGACAGT | GGAGCTTCTT | CTGTTGCTGC | TGCGACGGAC | 2640 | |||||||||
| 2641 | GGAAAAATAC | CTCTAAGTAT | AGCTGCAAAT | TCGAATCACC | TGTCGGTCCT | TAGATATCTC | 2700 | |||||||||
| 2701 | TTTAAAAGAG | AACATAATAC | AGTTACTTTA | ATGGAGGATT | CTTCATTTCT | CGTTGATCTC | 2760 | |||||||||
| 2761 | ATGGTGTGCG | GAAAACTTCA | TAATCATATA | CCATTGTTAG | AATTTGTATT | TGTATCACCA | 2820 | |||||||||
| 2821 | GCCCCAATTG | ATACAGCTGT | GAAAATGTCT | CGGAGATATG | AAGATTTAGC | GCAAAGAGAG | 2880 | |||||||||
| 2881 | AAAGAAAGAG | CTCGTGATTT | AGAAAACATG | GCAGTATTTT | GCGAGTCTCT | AGCTTCGGAT | 2940 | |||||||||
| 2941 | CTGCTGGCTA | TCGCAGCGAG | CAATAATGCA | GCAGGACTTC | TTCTTCAAGC | TGGTGATCAC | 3000 | |||||||||
| 3001 | AAAAATACAG | TTTTTCTCGA | TGTTCTCATA | GAATTAGAAA | GAAAAGACGT | TGTTGCCCAT | 3060 | |||||||||
| 3061 | TCTGCTGTCC | AAAAATACCT | ATCTGACGTA | TGGATGGGGA | ATCTGAAATG | GCCTGCCTGG | 3120 | |||||||||
| 3121 | CAAATAATCC | TCCTTTTCCT | TGCTTTTATT | TTTTGTCCTG | TTACGTGGAT | GGCTTGTTCT | 3180 | |||||||||
| 3181 | CTTCCACTAC | ACAGATTGGC | CAATATACCT | ATCATTAAAT | TTATGTCATA | CCTTGTATCA | 3240 | |||||||||
| 3241 | CATATATTTT | TAATTTTCTT | ATTATGCTTT | TCAATTTTAA | ATCCTTATTT | CCCACTATGG | 3300 | |||||||||
| 3301 | AATTCGACTC | GTCTACTTCC | TCATCCACAC | GAATGGTTGC | TTTTACTTTG | GCTCATTGGT | 3360 | |||||||||
| 3361 | TTCATGGTCG | CGGTAAATGT | AAATCCAAGA | GAACGCGGAG | GCTTAGGCTG | GATAAAACTC | 3420 | |||||||||
| 3421 | GTCATCGTTT | CATTTGGAAT | GGTTGCCATA | CTCATCCACC | TTTCAGGGTT | CTTTTTTTCT | 3480 | |||||||||
| 3481 | GAAGAAAGTC | GATTAGTAAT | ATTGTATATC | AGAAATCAGC | TTTTAGCTGT | ATGTCTGCTT | 3540 | |||||||||
| 3541 | TTAGCCTTTT | TTGAATTCCT | CAACTTTTTA | ACTTTTCATC | ATCTATTTGG | CCCATGGGCA | 3600 | |||||||||
| 3601 | ATTATTATCA | GGGATCTCAT | GAAAGATTTA | ATGAGATTTT | TAGCCATCCT | TGCCATATTT | 3660 | |||||||||
| 3661 | TTGACAGGGT | TTTCTCTACA | TATCTGCGCA | GTCTACCAGC | CTGTGTTTGA | TCCAGGAAAT | 3720 | |||||||||
| 3721 | AAAACGGTCG | CTGTTGGAGC | GGAAGTGTTT | CAGTCACCTA | TTGGAACATT | TGAAATGCTT | 3780 | |||||||||
| 3781 | TTCTATGCTT | TGTTTGGCCT | TGTAGAGCCA | GATTACATGC | CACCAATGCA | CTTAAGTCCA | 3840 | |||||||||
| 3841 | CCTTTTGCAA | AAGTCATCAT | GAAGGTTGTG | TTTGGTGTTT | ACATGATGGT | AACTGTCATC | 3900 | |||||||||
| 3901 | GTGCTAATTA | ATTTACTAAT | AGCCATGATG | TCAAATACAT | ATCAAAGAAT | CCAATCACAA | 3960 | |||||||||
| 3961 | TCTGATAAAG | AATGGAAATA | TGGTCGTGCA | AAGCTAATCA | GAAACATGAA | TATGACTCTT | 4020 | |||||||||
| 4021 | CCCACACCAC | CTCCACTAAA | TATCATCACA | TTTATTCCAA | CATTAATTCA | AAGATGGAAA | 4080 | |||||||||
| 4081 | GCGAAGAAAA | GAGCGGCAAG | TAGGGCTGGG | CGATCTGAGC | CAAAAGTAGA | AAAAGGTACT | 4140 | |||||||||
| 4141 | ACAATCCTCT | GGTTATTTGG | CCACGGAGCT | GCAAGATCGT | GGTTTAACAG | GAAAATGCGC | 4200 | |||||||||
| 4201 | AAAAGACCAA | TGCAAGTTTC | TCCAGTTGAC | TTTCGGCAAG | GGCTAGATGG | AAGTCATGGA | 4260 | |||||||||
| 4261 | GATCTACGAC | CTATAAGCTC | TGTCATAAAC | TGGAAAAGCA | TGGTGAACAA | ATATTTGGAA | 4320 | |||||||||
| 4321 | ATAAAAGGTA | TTGATTTGGG | AACTACACCA | CAAGACGGAA | GTCAAGAAGA | A | 4371 | |||||||||
| Single Nucleotide Polymorphisms | ||||
| 198 | C= 0.80 | T= 0.20 | ||
| 233 | G= 0.83 | T= 0.17 | ||
| 250 | A= 0.86 | T= 0.14 | ||
| 371 | G= 0.86 | T= 0.14 | ||
| 373 | G= 0.86 | T= 0.14 | ||
| 374 | C= 0.86 | T= 0.14 | ||
| 378 | T= 0.86 | G= 0.14 | ||
| 435 | A= 0.67 | G= 0.33 | ||
| 495 | G= 0.83 | T= 0.17 | ||
| 520 | T= 0.86 | C= 0.14 | ||
| 779 | A= 0.82 | G= 0.18 | ||
| 807 | A= 0.56 | G= 0.44 | ||
| 808 | G= 0.56 | A= 0.44 | ||
| 841 | A= 0.83 | G= 0.17 | ||
| 873 | A= 0.67 | C= 0.33 | ||
| 1258 | A= 0.80 | G= 0.20 | ||
| 1326 | T= 0.89 | A= 0.11 | ||
| 1419 | T= 0.86 | G= 0.14 | ||
| 1449 | T= 0.83 | G= 0.17 | ||
| 1515 | A= 0.80 | C= 0.20 | ||
| 1617 | T= 0.83 | C= 0.17 | ||
| 2017 | T= 0.78 | A= 0.22 | ||
| 2024 | C= 0.89 | A= 0.11 | ||
| 2128 | C= 0.83 | T= 0.17 | ||
| 2129 | A= 0.83 | C= 0.17 | ||
| 2400 | T= 0.54 | C= 0.46 | ||
| 2610 | T= 0.83 | G= 0.17 | ||
| 2677 | C= 0.86 | A= 0.14 | ||
| 2700 | C= 0.63 | T= 0.38 | ||
| 2705 | A= 0.86 | C= 0.14 | ||
| 2810 | T= 0.89 | C= 0.11 | ||
| 2815 | T= 0.89 | A= 0.11 | ||
| 2895 | T= 0.89 | G= 0.11 | ||
| 2959 | A= 0.88 | T= 0.13 | ||
| 3097 | G= 0.89 | T= 0.11 | ||
| 3398 | G= 0.82 | A= 0.18 | ||
| 3426 | C= 0.89 | A= 0.11 | ||
| 3597 | G= 0.75 | A= 0.25 | ||
| 3637 | T= 0.86 | A= 0.14 | ||
| 3746 | T= 0.89 | A= 0.11 | ||
| 3866 | T= 0.83 | C= 0.17 | ||
| 3934 | A= 0.86 | G= 0.14 | ||
| 3963 | T= 0.89 | A= 0.11 | ||
| 3966 | T= 0.89 | A= 0.11 | ||
| 4203 | A= 0.89 | G= 0.11 | ||
| 4306 | A= 0.67 | G= 0.33 | ||
| 4307 | A= 0.67 | G= 0.33 | ||