| CSH_0524_Complete Single nucleotide polymorphisms | ||||||||||||||||
| 1 | ATGAGCCAAA | GCCTTCTACA | CGGAAAGAGA | TTTTTTTGCA | GGGAATGGGC | ATTTGCCAAG | 60 | |||||||||
| 61 | ATCAGTCATT | GCTTAGAGAG | TCGTTCTTCA | TCAAAGACCT | GTGGTACTCT | TCTAACTGGT | 120 | |||||||||
| 121 | GGACCTGGTT | CTGGCAAGAC | AGCTTTATGC | TGCGAACTTG | TTTGGCCAAC | AAACATCCAA | 180 | |||||||||
| 181 | GGAAAGCAAA | GCCTGTTGAG | TAAACGGTTG | CTTGCATACC | ACTTTTGTCA | GGCTCATGAT | 240 | |||||||||
| 241 | ATTAGCAGTC | TTTCTCTTAC | TTCTTTCATC | AACAATCTTA | TCAGCCAATT | CACAGCATCT | 300 | |||||||||
| 301 | CCATTAATTA | ATGGGTATAG | TGACAGGATT | AAGAGCCCAG | AGATTGAAGC | TGCTCTTCAG | 360 | |||||||||
| 361 | TTATCAGAAT | GCGAAAGGAA | TCCCGATGAT | GCGTTTAAAA | AGGGGGTGTT | ATTTCCACTT | 420 | |||||||||
| 421 | CTTGAAATTG | ATCCTCCAAG | TCAGCCCTGT | TTCATTCTCG | TAGATTCTGT | TGATCAGTCA | 480 | |||||||||
| 481 | ATTCTGGGAG | CTGTTGGTGA | AAAGAATAGT | GGAGTCAGCC | GGAGTATTGC | AGAACTGTTA | 540 | |||||||||
| 541 | TCTAATTATC | ACCACCTTTT | CCCAAGATGG | TTACTTTTAC | TTTGTTCTTC | AAGGAAACAA | 600 | |||||||||
| 601 | AGCAAAAGTG | TTACAAGAAT | GTTCACAGGT | TTCAGAAAAA | TAAGTTTAGA | CGATCTACGA | 660 | |||||||||
| 661 | AAATCTCATG | TTGTACGCGA | TGTACAGCAG | TATATTCTTT | GCCGATTAGA | TCAGGAAGAA | 720 | |||||||||
| 721 | GCTTTAAGAC | ATCATTTAAG | CAGGGAAACG | GCTGAAATGC | TCAACCAACT | TCACATCAAA | 780 | |||||||||
| 781 | AGTAACGGAT | GTTTCATGTA | TCTTGAAAAA | GTCCTAGATG | GTGTAGCAGA | AAATTTTATA | 840 | |||||||||
| 841 | ATGTTAAGAG | AAGTTCGAGA | AATTCCAGGG | ACGCTGAATG | GCTTATATCT | TTGGCTGTGT | 900 | |||||||||
| 901 | CAGAGATTGT | TCGTTAGGAA | ACAATTTAAT | AAAGTTCAAG | CTATACTGAA | TGTCATTCTT | 960 | |||||||||
| 961 | GCATCAAGAA | AGCCTTTAAC | TGAAGAAGTA | TTATTTCAAT | GTGTATGGAC | TCGAAATACT | 1020 | |||||||||
| 1021 | AATTTAACTT | GGGAAGAGTT | TCAGAAAAGA | CTAGGGCTTT | TATCTAAAGT | TTTGATCGAA | 1080 | |||||||||
| 1081 | GGTAAAGGTG | GGACTAAAAT | GCTCTTTCAT | CATAGCTTTG | CAGAATGGCT | TTTGGATGTT | 1140 | |||||||||
| 1141 | AAACATTGTA | CTCAGAAATA | TTTATGTAAT | GCCAAAGATG | GCCATGGTAT | GATAGCTATG | 1200 | |||||||||
| 1201 | CGATATACGT | TAGCTTCGCC | CCATCTTTCA | TCTGAGGAAA | TAATAGACTT | TGCTCTGCAT | 1260 | |||||||||
| 1261 | TTAAGCAAAA | TTCCATTGAC | TGCATCATTA | CAGGCGCATC | ATATAACCTT | ATGGCTCATG | 1320 | |||||||||
| 1321 | TATTGTAATT | TAGCCCTTGA | AGACTGCCTA | GCAAAAACTT | CAATGCTCAA | AGATCCGCAA | 1380 | |||||||||
| 1381 | ACTGTGAAGC | TTCTAGTCAG | TGCTGGTGCC | AAGTTGCCAA | CAGGTGATGT | TGTGAAGGAC | 1440 | |||||||||
| 1441 | AGTAGTCCTA | AAGTGCCTGA | TGATCCTCTT | GAAGCCTTAA | TATCTGTGGG | GGCAGACATC | 1500 | |||||||||
| 1501 | AATCAGGCTG | ACAGTAATCA | GAGAACCTTA | CTTCATAGTG | CCTGTCATGA | AGGCATTGAT | 1560 | |||||||||
| 1561 | AATTTAGTTT | TAAGATTAAT | TGAAAAAGGA | GCTCATCTGG | AGGCAGTAGA | TAAAAATGGA | 1620 | |||||||||
| 1621 | CAGTCCCCAA | TTAATCTTGC | TGCACGCCAG | GGACACGCTC | GCATTGTAGA | AATGTTGCTA | 1680 | |||||||||
| 1681 | AAAGCCGGAG | CAGATCCTGA | TCACGCCGAT | AATGATGGCT | GGACGCCTCT | GCGATCTTCT | 1740 | |||||||||
| 1741 | GCTTGGGCTG | GTCACACAGA | GGTGGTTAAC | GTTCTTCTTG | AAAATGGAGC | TCAAGTCGAC | 1800 | |||||||||
| 1801 | TTAGCTGATG | CAGATCACAG | AACAGCATTG | CGTGCTGCAG | CCTGGGGAGG | CCATGAAGAA | 1860 | |||||||||
| 1861 | ATAGTTTCTC | GGCTTCTTGC | CCATGGAGCT | TGTGTTAACA | AAGTGGACAA | CGAAGGTCGA | 1920 | |||||||||
| 1921 | ACAGCTTTAA | TCGCTGCTGC | TTACATGGGT | CATACTGAGA | TTGTGCAGCA | ACTTTTAGAT | 1980 | |||||||||
| 1981 | CATGATGCCG | AGATAAACCA | TGCCGATAAC | GATGGACGGA | CGGCACTATC | TGTCGCCGCG | 2040 | |||||||||
| 2041 | CTTTGTGTGC | CCGCATCCGA | GGGCCATGCT | CGTGTTGTCA | GTTTACTTCT | AGAAAGAGGT | 2100 | |||||||||
| 2101 | ACAGAAGTAG | ATCACCGAGA | CAAGGATGGG | ATGACACCTC | TTTTGGTGGC | TGCATTTGAA | 2160 | |||||||||
| 2161 | GGTCACAGTG | AGGTTTGTGA | GCTTCTTCTT | GAAAATGAAG | CTGATGTGGA | CCATACTGAT | 2220 | |||||||||
| 2221 | CACAACGGAC | GAACCCCGTT | AGTGGCTGCC | GCGTCAATGG | GTCATCCGTC | TGTTGTCAGC | 2280 | |||||||||
| 2281 | CTGCTGCTGT | TTTGGGGAGC | TGCTGTGGAT | ACAATTGATG | CAGAAGGCCG | CACGGTTCTA | 2340 | |||||||||
| 2341 | TCCATAGCTG | CTGCGCAAGG | AGATCCAGAT | ACTGTCCGTC | AGCTCCTAGA | TCGAGGTTTA | 2400 | |||||||||
| 2401 | GATGAAATGC | ATCGGGACAA | TGGAGGTTGG | ACTCCATTGC | ATTATGCTGC | TTTCGAAGGA | 2460 | |||||||||
| 2461 | CACACAGAAG | CATGTGGCTT | GTTGCTGGAG | GCTGGTGCCA | AAATAACTGA | GGTGGATAAT | 2520 | |||||||||
| 2521 | GACGGAAGAA | TTCCTCTCAT | TCTAGCTGCC | CAGGAAGGTC | ATACCACTCT | GGTGGGAAAA | 2580 | |||||||||
| 2581 | CTTCTGGAAC | ACACACCCTC | GATGATCGAC | TGTCGAGCTC | ATGATGGAAA | GACCGCGCTC | 2640 | |||||||||
| 2641 | AGAATTGCTA | CGCTGGAAGG | CCATAAAGAA | ACAGTTGAAC | TTCTCATCAA | TCACGGAGCC | 2700 | |||||||||
| 2701 | GATCTTAACT | ACAAGGATGC | TGATGGACGA | TCGACTCTAT | ATTTGCTTGC | TCTTGAAAAC | 2760 | |||||||||
| 2761 | CGCACCGACA | TGGCTGAATT | TCTTTTGTCC | AAAGGTGCTG | ATGTTGGAGC | CCGTGATCTC | 2820 | |||||||||
| 2821 | GAAGGTCGTA | CAGCCCTTCA | CGTTTCCGCT | TGGCAGGGTC | ACACAGATAT | GGTAGAATTA | 2880 | |||||||||
| 2881 | TTGCTAAATC | ATGGGGCAGA | CGTGAATGCT | GTCGATAATG | ATTATCGGAC | AGCTTTGCAA | 2940 | |||||||||
| 2941 | TCAGCAGCTT | GGCAAGGACA | TGTATCTGTA | GTTCGTCTGT | TATTAGAAAG | AAATGCCGTA | 3000 | |||||||||
| 3001 | GTTGATCATG | TTTGCAATCA | GGGGGCGACT | GCTTTGTGTA | TAGCAGCTCA | AGAAGGTCAT | 3060 | |||||||||
| 3061 | CTGGAGGTAG | TTAAAGCACT | TCTGGAGTAT | GGGGCAGATC | CTAGCCATGC | CGATCAATTT | 3120 | |||||||||
| 3121 | GGTAGAAATC | CAATCCGTGT | TGCTTCAAAA | GGAGGTCACA | GTAGCGTGAT | TCGTTTGCTA | 3180 | |||||||||
| 3181 | GAAGAATATG | TAGCCCATTT | GCATGACGTT | GGAAATAATT | TCTCTGGTAG | TATTAGTACT | 3240 | |||||||||
| 3241 | ACCTCTTTAA | CATCAGCATC | AACCGCAGAA | ACCAAGCCAT | GTAGTGCTAT | CTTATGTCAA | 3300 | |||||||||
| 3301 | CCTGGGGGCT | CAGCACAATC | TCCTATAGAG | TCGCCGGAGT | CAACAGTCGA | TAAAAGACGT | 3360 | |||||||||
| 3361 | TCTTTTATTT | CCAATCAATC | GTCATCCAAA | TCTTCTAGCA | ACTTAACTAA | TTCGACCAAT | 3420 | |||||||||
| 3421 | AAGTCATCTT | CCAAAACGCA | CTCTCAACCT | CCCCAACAAA | TTAGCCAAGA | TTCCTGTTCA | 3480 | |||||||||
| 3481 | AATTTACATG | CAGCATTAGC | TATTCAGAAT | GAAAAGGCTG | TCGGTTCACA | GATGACTTTT | 3540 | |||||||||
| 3541 | ACTCAGCAAT | TGCAGCAGTG | TACTCGAAAC | CGAAATCGTA | TTAGTCGACT | GCTTTCACCC | 3600 | |||||||||
| 3601 | TTGAGTGAAC | CTCATAGTCC | AGTACCCAGT | CCACCTCAAA | GCCCACTGAG | TGATATACAA | 3660 | |||||||||
| 3661 | GGTCCAGTTC | AAACCACGAG | TCCTAGTGGA | GAAGGAGCCT | ATAATGTTCC | CTATATGTCT | 3720 | |||||||||
| 3721 | CATTCTACCC | ATGTACCCAT | TGTTATTCCT | CCTATCATAC | ACGAATCTAG | CCGACAGTCG | 3780 | |||||||||
| 3781 | CATTTACCCC | GAAGAATATC | TGAGACCATG | AACCCAATTG | ATTCCAGTCA | CCCCATACCA | 3840 | |||||||||
| 3841 | AGGCCCACGG | AGCCACGTAT | ACGGAGGAAT | GGTATTGTTA | CTAATCCGAA | TTATAAAGGC | 3900 | |||||||||
| 3901 | AACAACATAA | TGTCGGCAGT | GCCAGTGAAA | AATAGTCCTG | TAAAACAGTC | CACAGCTGTG | 3960 | |||||||||
| 3961 | AACAATCATT | CTGGACAGAT | GAAGTCCAAG | CACATTTCTC | AGTATGAAGA | ACCTCTCAAA | 4020 | |||||||||
| 4021 | ACTACTGCAA | TGCCTTTCAA | GAAAGAGACT | CATTTA | 4056 | |||||||||||
| Single Nucleotide Polymorphisms | ||||
| 2058 | C= 0.78 | T= 0.23 | ||
| 2415 | G= 0.69 | A= 0.31 | ||
| 2751 | T= 0.71 | G= 0.29 | ||
| 3714 | T= 0.79 | C= 0.21 | ||
| 3936 | T= 0.80 | C= 0.20 | ||
| 3942 | A= 0.69 | T= 0.31 | ||