CSH_539_SNPS | ||||||||||||||||
1 | ATGGCTGAAG | CAAGAATTGC | TGTAGCTGAA | CCTAGAGTGA | ATACTGTTGA | AGAAATTTCT | 60 | |||||||||
61 | TCTCCGCAGA | CATGGAAAGA | AGTGTTTTCT | TCATTTCGTA | GTACTGCAAC | TAAACGATAC | 120 | |||||||||
121 | TACAAAGTTA | GGAATCTTAT | TTATAATGGA | GTATGGCCTG | CAACTCTTTC | TAATGTTAGA | 180 | |||||||||
181 | CTCACGATCA | GTACATGTAT | TGCTCTCATG | CTTATTGAGC | CAAGTATTAC | TTCACCTATA | 240 | |||||||||
241 | AATGCATTTT | TATGGAAAAT | AACACATATT | TTATATTTGA | AAGGTTTGCC | AAGAACTCTG | 300 | |||||||||
301 | CAGGCATTGT | TAGTTTCTGG | ATTGGTTGGA | GTTGTGTCAT | TTATCTTATT | AATGGTTGTA | 360 | |||||||||
361 | CGGCAAGGAT | TGTTAAGACT | GCTTTTGTCA | TATAGGGGAT | GGATGTATGA | AAATCCTCGA | 420 | |||||||||
421 | AGTCACACAA | TAGTTACAAA | AATGTGGTGT | GGGGCTGTAA | AGTTATTGAG | TGGGTACAAA | 480 | |||||||||
481 | CCTTCATTGT | ATAGTTGCCA | AAGATCTCTT | CCTCGTCTTC | CAGTTCCTGC | TGTGCGGGAT | 540 | |||||||||
541 | ACACTCAATA | GGTTATATGA | ATCATTGAGG | CCTCTCTGTA | CAGATGCTGA | ATTAAAAGAA | 600 | |||||||||
601 | ATTATGCAAC | AGGGAAAGGA | ATTTGAAAGC | ACGCTATCTC | ACAAGCTGCA | AAATGTATTA | 660 | |||||||||
661 | CTGTTAAAGT | CATGGTTTTG | TCAAAACTAT | GTGAGTGACT | GGTGGGAGAA | GTATGCATAT | 720 | |||||||||
721 | CTTAGGAGTC | GCAGTCCTTT | ACCAAATAAT | AGCAATTATT | ATTGTTGTGA | TGAATGTTAT | 780 | |||||||||
781 | TGGGTGCCCA | CAGATAAGCC | AGTTTCTCGA | GCTGCTTATT | TGATATACAA | CATACTTGTG | 840 | |||||||||
841 | TGTAAGAGAC | TGATTGATCG | GGAAGAGCTT | GAACCATTAG | TTCTTAGAAG | TACAGTTCCT | 900 | |||||||||
901 | ATTTGTATGG | CTCAGTATGA | AAGGCTATTT | AGTGCTGTGA | GGATTCCTGG | AGTTGAAGAT | 960 | |||||||||
961 | GATCATATTT | TACACTGTGA | AGATTCTAAG | CATATTGTTA | TTTCTGTTAA | TGGAGTTTAT | 1020 | |||||||||
1021 | TACAAGGTAG | ATGTTTGTGA | TTCAAAAAAT | CAGTTGTTAG | CCCCCACAAC | TTTGGAGGAA | 1080 | |||||||||
1081 | CAGTTGAATT | GGATTGTTGA | AGATGCTAAA | AATCAGCAAG | AATCCTATAC | TGAAGCTGAA | 1140 | |||||||||
1141 | AAGTCTATTG | CATCATTGAC | TGCTTTAAAA | CGTCCTCAGT | GGGCAGACAT | TCGTAAAACT | 1200 | |||||||||
1201 | CACCTAAGCT | CTGGAGTGAA | TAGAGATAGT | CGTAGAATTA | TCGAGAAGGC | CATATTTTGT | 1260 | |||||||||
1261 | GTTACTTTAA | CAGATTATGT | ACCTTCAAAC | CTCACTGAGA | AAGGCAAATA | CTTGTTACAC | 1320 | |||||||||
1321 | GGAGATGGCA | AGTCTCTTTG | GTTTGATAAA | TCTCTTAATC | TCATTGTATT | TGGAAATGCT | 1380 | |||||||||
1381 | GCTTCTGGAC | TGAATTGTGA | ACATACTGTT | GCTGATGCAC | CTGCAATGGC | TCATATGTGG | 1440 | |||||||||
1441 | GAATATGCCA | TGTCTAGAGA | AGTTTTGGAA | AGGCTCTTTG | ATGAAAATGG | CTATTGTATG | 1500 | |||||||||
1501 | CCATTCAGCC | GAGCTTTCAA | ACAGGCTAAA | GTGAAACAGC | CACAAAGACT | TATCTGGGAA | 1560 | |||||||||
1561 | ATCACTCCTG | ACCTTGAAGT | TAACATTAAA | GAAGCTGTAA | TATTTTCAAC | TATGAATAAT | 1620 | |||||||||
1621 | GATGATTTAG | ATTTAGAAGT | GTATGATCAC | AACAAGTGGG | GCAAAGGTGT | TATTAAGAAA | 1680 | |||||||||
1681 | TGCAAAGTAT | CTCCCGATGC | ATTTGTTCAA | CTTGCTTTGC | AGTTAGCTTA | TTATAAAGAA | 1740 | |||||||||
1741 | TCCAAAAAAT | TTGTGCAGAC | TTATGAAGCT | TCTATGACAA | GATTATACTT | ATGTGGTAGG | 1800 | |||||||||
1801 | ACTGAAACTG | TTAGATCTTG | TACTGTGGAA | TCTAAAGATT | TTGTGTTGAG | CATGGTGAAA | 1860 | |||||||||
1861 | AAAGATGCTG | ATAATACTAT | GAAGCAGAAC | TTATTGATAC | AAGCAGCAGA | GAAACACCAG | 1920 | |||||||||
1921 | CAACTTTACA | GAGATGCCAT | GAATGGTAAA | GGAATTGATC | GTCACCTGTT | TGCTCTGTAT | 1980 | |||||||||
1981 | GTTGCTTGCA | AAGGATATGG | CTATGAGAGT | GATTTTCTGC | TCAAAACAAT | AACCCGTCCA | 2040 | |||||||||
2041 | TGGACACTTT | CTACTAGTCA | GACACCCCAT | ACACAACTAA | CTGCCCTGCC | AGATGCAAAT | 2100 | |||||||||
2101 | TTGCACATCT | TTGATGATAA | GCTTGGAGCT | GGTGGAGGTT | TTGGTCCTGT | GTCAGATGAA | 2160 | |||||||||
2161 | GGCTATGGAG | TATCATACCT | CTTTCCATCT | GATAATAGAA | TCTTCTTCCA | TGTGTCGTCT | 2220 | |||||||||
2221 | AAATTTTCCT | GTCCACATAC | CAGTTCAAAA | CGATTTTTAA | GTCTTTTGGT | AGAAAGCATG | 2280 | |||||||||
2281 | CAGGAAATGG | TTTCAATATG | TGAAGATCAG | 2310 |
Single Nucleotide Polymorphisms | ||||
741 | A= 0.77 | G= 0.23 | ||
1962 | T= 0.85 | C= 0.15 | ||
2067 | C= 0.89 | T= 0.11 |